New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1252645	56 (1.060)	4 (0.080)	3/244	NT	7.4%	coding (165/972 nt)	PP_1095	electron transport complex protein
	?	NC_002947	= 1252684	47 (0.930)					coding (126/972 nt)	PP_1095	electron transport complex protein

CGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCA‑GCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGCTGGTGCGTAGGCGCGGATCGGGACTGCTCATTGGCCAAACATTCCG  >  NC_002947/1252536‑1252824                                                                                                                                                      |                                                                                                                                             cgATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCA‑GCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTg                                                                                                                                              >  7:266949/1‑149 (MQ=255)    tGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCA‑GCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGgcg                                                                                                                                           >  2:64108‑M2/1‑146 (MQ=255)        cGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCA‑GCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGcaca                                                                                                                                       <  7:157320/149‑1 (MQ=255)               caccaTGGCGCCAAGGTGTGCAGGGGGGCCGCCA‑GCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCTCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAg                                                                                                                                <  6:313963/149‑1 (MQ=255)                accaTGGCGCCAAGGTGGGCAGGGCGGCCGCCAGGCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTg                                                                                                                                              >  1:223222/1‑135 (MQ=255)                accaTGGCGCCAAGGTGGGCAGGGCGGCCGCCA‑GCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTg                                                                                                                                              <  2:223222/134‑1 (MQ=255)                accaTGGCGCCAAGGTGGGCAGGGCGGCCGCCA‑GCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAgg                                                                                                                               <  3:60796/149‑1 (MQ=255)                        gcCAAGGTGGGCAGGGCGGCCGCCA‑GCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGg                                                                                                                                             <  6:39746‑M2/127‑2 (MQ=255)                          cAAGGTGGGCAGGGCGGCCGCCA‑GCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGcat                                                                                                                       <  7:73926/147‑1 (MQ=255)                          cAAGGTGGGCAGGGCGGCCGCCA‑GCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGcat                                                                                                                       >  8:73926/1‑147 (MQ=255)                           aaGGTGGGCAGGGCGGCCGCCA‑GCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGcatcat                                                                                                                    <  6:36383/149‑1 (MQ=255)                             ggTGGGCAGGGCGGCCGCCA‑GCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGtt                                                                                                                             <  6:338431/138‑1 (MQ=255)                             ggTGGGCAGGGCGGCCGCCA‑GCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGtt                                                                                                                             >  5:338431/1‑138 (MQ=255)                             ggTGGGCAGGGCGGCCGCCA‑GCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGc                                                                                                                  <  3:317185/149‑1 (MQ=255)                              gTGGGCAGGGCGGCCGCCA‑GCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGcatc                                                                                                                      >  3:87559/1‑144 (MQ=255)                              gTGGGCAGGGCGGCCGCCA‑GCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGcatc                                                                                                                      <  4:87559/144‑1 (MQ=255)                              gTGGGCAGGGCGGCCGCCA‑GCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGcc                                                                                                                 >  4:13023/1‑149 (MQ=255)                              gTGGGCAGGGCGGCCGCCA‑GCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGcc                                                                                                                 >  8:243661/1‑149 (MQ=255)                               tGGGCAGGGCGGCCGCCA‑GCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTAAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGccc                                                                                                                >  1:267106/1‑149 (MQ=255)                                      ggcggcCGCCA‑GCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCAt                                                                                                         <  8:266949/149‑1 (MQ=255)                                        cggcCGCCA‑GCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATg                                                                                                        >  2:18848/1‑148 (MQ=255)                                        cggcCGCCA‑GCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATg                                                                                                        <  1:18848/148‑1 (MQ=255)                                                        cggcggTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGc                                                                                                       >  6:128667/1‑134 (MQ=255)                                                                              gtcgtTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGc                                                                        >  7:22371/1‑143 (MQ=255)                                                                              gtcgtTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGc                                                                        <  8:22371/143‑1 (MQ=255)                                                                                      gcgcCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGAcc                                                          <  5:129859/149‑1 (MQ=255)                                                                                       cgcCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCa                                                         <  7:243661/149‑1 (MQ=255)                                                                                       cgcCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCa                                                         <  3:13023/149‑1 (MQ=255)                                                                                        gcCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAg                                                        >  3:76657/1‑149 (MQ=255)                                                                                            ggCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGcc                                                     >  5:66291/1‑148 (MQ=255)                                                                                             gCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCacaa                                                                                               <  2:296112/105‑1 (MQ=255)                                                                                             gCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGccc                                                    <  8:325290/148‑1 (MQ=255)                                                                                             gCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCa                                                   >  2:200574/1‑149 (MQ=255)                                                                                               tCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATg                                                 >  2:314369/1‑149 (MQ=255)                                                                                                cAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCTTGCAGCCACAACAGCGCCAGCAGCCCAGGc                                                                            <  1:30834/121‑1 (MQ=255)                                                                                                cAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGc                                                                            >  2:30834/1‑121 (MQ=255)                                                                                                cAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGc                                                >  7:268741/1‑149 (MQ=255)                                                                                                 aGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGc                                                <  2:267106/148‑1 (MQ=255)                                                                                                   cGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGCTgg                                             <  7:18433/149‑1 (MQ=255)                                                                                                        ggCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGCTGGTGCg                                         >  1:258871/1‑148 (MQ=255)                                                                                                           tGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGgcgcagccaatcgctgagccaggcgctaaacgacggcagcgcactggtgaccgccgtactgctggcggccgccctgcccaccttggcgccatggtggctgccggt                                     <  1:8227‑M2/149‑106 (MQ=255)                                                                                                           tGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGcgcagccaatcgctgagccaggcgctaaacgacggcagcgcactggtgaccgccgtactgctggcggccgccctgcccaccttggcgccatggtggctgccggt                                      <  7:77562‑M2/148‑105 (MQ=255)                                                                                                            gcgcAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGgcgcagccaatcgctgagccaggcgctaaacgacggcagcgcactggtgaccgccgtactgctggcggccgccctgcccaccttggcgccatggtggctgccggt                                     <  6:328110‑M2/148‑106 (MQ=255)                                                                                                                 gTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGgcgcagccaatcgctgagccaggcgctaaacgacggcagcgcactggtgaccgccgtactgctggcggccgccctgcccaccttggcgccatggtggctgccggtcatcgc                               >  5:328110‑M2/1‑38 (MQ=255)                                                                                                                      agcagcAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGCTGGTGCGTAGGCGCGGATCgg                           >  3:160713/1‑148 (MQ=255)                                                                                                                        cagcaATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGCTGGTGCGTAGGCGCGGATCGGGAc                        <  4:76657/149‑1 (MQ=255)                                                                                                                           caATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGAcc                                                          <  4:13141/112‑1 (MQ=255)                                                                                                                           caATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGAcc                                                          >  3:13141/1‑112 (MQ=255)                                                                                                                           caATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGCTGGTGCGTAGGCGCGGATCGGGACTGc                     <  1:314369/149‑1 (MQ=255)                                                                                                                             aTGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGCTGGTGCGTAGGCGCGGATCGGGACTGCt                    >  8:58301/1‑148 (MQ=255)                                                                                                                                 cTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGCTGGTGCGTAGGCGCGGATCGGGACTGCTCATTg               >  7:175734/1‑149 (MQ=255)                                                                                                                                    gCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGCTGGTGCGTAGGCGCGGATCGGGACTGCTCATTGGcc            <  4:160713/149‑1 (MQ=255)                                                                                                                                      acaGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCa                                                                               <  5:34545/80‑1 (MQ=255)                                                                                                                                         gcagcGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATACCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGCTGGTGCGTAGGCGCGGATCGGGACTGCTCATTGGCCAAAc        >  2:30917/1‑148 (MQ=255)                                                                                                                                         gcagcGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATACCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGCTGGTGCGTACGCGCGGATCGGGACTGCTCATTGGCCAAAc        <  1:30917/148‑1 (MQ=255)                                                                                                                                              gcgGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCTCAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGCTGGTGCGTAGGCGCGGATCGGGACTGCTCATTGGCCAAACATTCCg  <  1:200574/149‑1 (MQ=255)                                                                                                                                              gcgGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGCTGGTGCGTAGGCGCGGATCGGGACTGCTCATTGGCCAAACATTCCg  <  8:175734/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                             CGATGACCGGCAGCCACCATGGCGCCAAGGTGGGCAGGGCGGCCGCCA‑GCAGTACGGCGGTCACCAGTGCGCTGCCGTCGTTTAGCGCCTGGCTCAGCGATTGGCTGCGCAGTGCCAGCAGCAATGCCTCGCACAGCAGCGCGGCACTGGCGCACAGCAACAGGTTCAGCATCATGCCCCAGCCATGCAGCCACAACAGCGCCAGCAGCCCAGGCGTGCAGGCGAGCAAGACCAGGCCCATGCTGGTGCGTAGGCGCGGATCGGGACTGCTCATTGGCCAAACATTCCG  >  NC_002947/1252536‑1252824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.