New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1612861	54 (1.020)	3 (0.060)	3/234	NT	5.9%	coding (658/693 nt)	ung	uracil‑DNA glycosylase
	?	NC_002947	= 1612883	46 (0.950)					coding (680/693 nt)	ung	uracil‑DNA glycosylase

GTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATGGTTCTGGCGCACGTACTCCACCAAGGCTTCAAGGTCGGTGATGC  >  NC_002947/1612748‑1613026                                                                                                                                         |                                                                                                                                                gTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTga                                                                                                                                    <  5:103112/149‑1 (MQ=255) gTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTga                                                                                                                                    <  3:191880/149‑1 (MQ=255)  tACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCtgt                                                                                                                                      >  3:273523/1‑146 (MQ=255)      aaGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAAc                                                                                                                               <  5:137801/149‑1 (MQ=255)         cATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACcgc                                                                                                                            <  5:145659/149‑1 (MQ=255)          aTCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTgcccccgct                                                                                                                                        <  1:186825‑M2/136‑10 (MQ=255)          aTCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTgcccccgct                                                                                                                                        >  2:186825‑M2/1‑127 (MQ=255)             tGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCtgtg                                                                                                                                     <  4:215958/136‑1 (MQ=255)             tGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCtgtg                                                                                                                                     >  3:215958/1‑136 (MQ=255)               gTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCgg                                                                                                                          <  7:59081/145‑1 (MQ=255)               gTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTggg                                                                                                                      <  5:277498/149‑1 (MQ=255)               gTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTggg                                                                                                                      <  1:743/149‑1 (MQ=255)               gTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTggg                                                                                                                      >  2:743/1‑149 (MQ=255)               gTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTg                                                                                                                        <  5:137906/147‑1 (MQ=255)                          ggTCCATCCTTCGCCACTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTg                                                                                                                        <  8:251449/136‑1 (MQ=255)                          ggTCCATCCTTCGCCACTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTg                                                                                                                        >  7:251449/1‑136 (MQ=255)                            tCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCt                                                                                                         >  1:129499/1‑149 (MQ=255)                               aTCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAg                                                                                                      <  7:182683/149‑1 (MQ=255)                               aTCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAg                                                                                                      <  5:175368/149‑1 (MQ=255)                                   ttCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCg                                                                                                  >  4:330511/1‑149 (MQ=255)                                      gccgcTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACcg                                                                                                                             <  2:233939/119‑1 (MQ=255)                                      gccgcTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACcg                                                                                                                             >  1:233939/1‑119 (MQ=255)                                          cTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGtcatgct                                                                                           <  4:273523/149‑1 (MQ=255)                                             tCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGtcatgctcat                                                                                        <  7:70961/149‑1 (MQ=255)                                             tCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGtcatgctc                                                                                          <  3:330511/147‑1 (MQ=255)                                              cGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTgcccc                                                                                                                                            >  2:14076‑M2/1‑91 (MQ=255)                                              cGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTgcccc                                                                                                                                            <  1:14076‑M2/96‑6 (MQ=255)                                               ggCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGtcatgctcatgc                                                                                      >  5:29300/1‑149 (MQ=255)                                                gCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGtcatg                                                                                             >  2:185549/1‑141 (MQ=255)                                                gCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGtcatg                                                                                             <  1:185549/141‑1 (MQ=255)                                                    aTCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGc                                                                                 >  6:118084/1‑149 (MQ=255)                                                     tCGCGGGTTCATGGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGc                                                                                 <  5:118084/148‑1 (MQ=255)                                                       gcgGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGCGAGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTc                                                                               >  1:87532/1‑149 (MQ=255)                                                               aTCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTcgctgcgctg                                                                      >  7:206820/1‑149 (MQ=255)                                                               aTCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTcgctgcgctg                                                                      >  6:2749/1‑149 (MQ=255)                                                                   gTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCgg                                                                                  <  7:319642/133‑1 (MQ=255)                                                                   gTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCgg                                                                                  >  8:319642/1‑133 (MQ=255)                                                                      gCGGGCATGTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCGCGGGCCCATCGCCTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAAt                                                                <  3:292065/148‑1 (MQ=255)                                                                                       gCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATg                                              <  2:87532/149‑1 (MQ=255)                                                                                          aaCAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGtcatgctcatg                                                                                       >  1:119803/1‑105 (MQ=255)                                                                                          aaCAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGtcatgctcatg                                                                                       <  2:119803/105‑1 (MQ=255)                                                                                           aCAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATGGTTc                                          <  6:29300/149‑1 (MQ=255)                                                                                                 tCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATGGTTCTGgcg                                     >  1:183890/1‑148 (MQ=255)                                                                                                    tCGAGC‑AGCGGGGACTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATgg                                             >  1:127403/1‑137 (MQ=255)                                                                                                    tCGAGC‑AGCGGGGACTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATgg                                             <  2:127403/137‑1 (MQ=255)                                                                                                           agcGGGGGCTCGGGCCCATCGACTGGGCACTgcccccgctgctcgaggaagctgttggcacggctgaaatgcccgcaaccgatgaacccgcgatacgccgacagcggcgaaggatggaccgacttcaaaaccaga                                         >  4:271094‑M2/1‑31 (MQ=255)                                                                                                            gcGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATGGTTCTGGCGCACGTACTcca                          <  5:2749/149‑1 (MQ=255)                                                                                                                    tCGGGCCCATCGACTGGGCACTgcccccgctgctcgaggaagctgttggcacggctgaaatgcccgcaaccgatgaacccgcgatacgccgacagcggcgaa                                                                 >  5:232168‑M2/1‑22 (MQ=255)                                                                                                                    tCGGGCCCATCGACTGGGCACTgcccccgctgctcgaggaagctgttggcacggctgaaatgcccgcaaccgatgaacccgcgatacgccgacagcggcgaa                                                                 <  6:232168‑M2/102‑81 (MQ=255)                                                                                                                        gCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCAAGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATGGTTCTGGCGCACGTACTCCACCAAGGCTTc                >  8:211806/1‑147 (MQ=255)                                                                                                                          ccATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATGGtt                                           <  3:68443/118‑1 (MQ=255)                                                                                                                          ccATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATGGtt                                           >  4:68443/1‑118 (MQ=255)                                                                                                                          ccATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATGGTTCTGGCGCACGTACTCCACCAAGGCTTCAAgg            >  2:252537/1‑149 (MQ=255)                                                                                                                           cATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATg                                                               >  2:217638/1‑97 (MQ=255)                                                                                                                           cATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATg                                                               <  1:217638/97‑1 (MQ=255)                                                                                                                            aTCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATGGTTCTGGCGCACGTACTCCACCAAGGCTTCAAGGTc          >  6:359367/1‑149 (MQ=255)                                                                                                                               gACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATGGTTCTGGCGCACGTACTCCACCAAGGCTTCAAGGTCgg        <  5:359367/148‑1 (MQ=255)                                                                                                                                    ggCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATGGTTCTGGCGCACGTACTCCACCAAGGCTTCAAGGTCGGTGATGc  >  6:340510/1‑149 (MQ=255)                                                                                                                                         |                                                                                                                                                GTACCAAGCATCTGGTTTTGAAGTCGGTCCATCCTTCGCCGCTGTCGGCGTATCGCGGGTTCATCGGTTGCGGGCATTTCAGCCGTGCCAACAGCTTCCTCGAGC‑AGCGGGGGCTCGGGCCCATCGACTGGGCACTGCCCCCGCTGTGAGAAACCGCGGTGGGGTACGCAATCGCTCAGGGCGTCATGCTCATGCGCGGCTCGCTGCGCTGGCCAATGGCAATCCCCCGCTCATGGTTCTGGCGCACGTACTCCACCAAGGCTTCAAGGTCGGTGATGC  >  NC_002947/1612748‑1613026

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.