New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1964581	51 (0.970)	4 (0.080)	3/238	NT	8.4%	coding (793/2526 nt)	yegE	phosphodiesterase domain‑containing diguanylate cyclase
	?	NC_002947	= 1964606	39 (0.790)					coding (818/2526 nt)	yegE	phosphodiesterase domain‑containing diguanylate cyclase

TGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCGGCCGCCGAGCAGTTGACCCACTGGCAATCCGGCCAGGCCCAGGGCCTGCCGCTGTCGGCACTGTTCAGCCTGGTGGATGA  >  NC_002947/1964468‑1964753                                                                                                                                           |                                                                                                                                                    tgcGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGAGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGc                                                                                                                                            >  3:334949/1‑148 (MQ=255)   cGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCa                                                                                                                                          <  2:11265/148‑1 (MQ=255)          tgctgATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCgg                                                                                                                                      >  8:312084/1‑145 (MQ=255)          tgctgATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCgg                                                                                                                                      <  7:312084/145‑1 (MQ=255)               aTCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCgg                                                                                                                              <  6:341170/148‑1 (MQ=255)                tCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCTGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGt                                                                                                                             <  2:240339/148‑1 (MQ=255)                  aCCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGAt                                                                                                                          <  6:228580/149‑1 (MQ=255)                        ctgctgACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAAc                                                                                                                    <  4:187827/149‑1 (MQ=255)                        ctgctgACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAAc                                                                                                                    <  4:183135/149‑1 (MQ=255)                              aCCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGt                                                                                                              >  5:241423/1‑149 (MQ=255)                                 gCAATGTTCGTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGa                                                                                                           >  8:209738/1‑149 (MQ=255)                                       ttCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGAtt                                                                                                                         >  1:58931/1‑129 (MQ=255)                                       ttCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGAtt                                                                                                                         <  2:58931/129‑1 (MQ=255)                                           tGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGc                                                                                                                                >  1:250766/1‑118 (MQ=255)                                           tGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGc                                                                                                                                <  2:250766/118‑1 (MQ=255)                                            taTCGCGATTGACTGGCGCCGGTCCAGTAAGCTGTTGTCCCAGCGTCAGGCCTTTGCGAGATCCCTGCATGAAGATAAATAGGGTGCGCAGATTACCCTGCAGGCCATCTGTTATGCGGTGATTACAACCGATGTCGAGGGAAATATc                                                                                                 <  8:321980/147‑1 (MQ=255)                                                 ccATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGc                                                                                                                                >  4:128708/1‑112 (MQ=255)                                                 ccATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGc                                                                                                                                <  3:128708/112‑1 (MQ=255)                                                          ggCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCg                                                                                  >  8:289947/1‑149 (MQ=255)                                                           gcgcCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCt                                                                                             <  7:86312/137‑1 (MQ=255)                                                           gcgcCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCt                                                                                             >  8:86312/1‑137 (MQ=255)                                                           gcgcCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCg                                                                                  <  4:334949/148‑1 (MQ=255)                                                             gccgcTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGACATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCGgcc                                                                               >  3:42765/1‑149 (MQ=255)                                                                gcTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGTAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCGgccgcc                                                                            <  6:215616/149‑1 (MQ=255)                                                                gcTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGGAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCGgccgcc                                                                            >  5:215616/1‑149 (MQ=255)                                                                gcTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCGgccgcc                                                                            <  7:209738/149‑1 (MQ=255)                                                                    cAGCAAGCTGTTGGCCGAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCGGCCGCCGAGc                                                                        <  6:241423/149‑1 (MQ=255)                                                                      gCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCGGCCGCCGAGCAg                                                                      <  7:289947/149‑1 (MQ=255)                                                                          gCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCCGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCGGCCGCCGAGCAGTTGa                                                                  <  6:302289/149‑1 (MQ=255)                                                                          gCTGTTGGCACAGAGCCAGGCCTTTGCCAGCGCCCAGCAGGAAGAAACAGAGCGTGCGCAGATTACCCTGCAGGCCATCGTTGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCGGCCGCCGAGCAGTTGa                                                                  <  4:42765/149‑1 (MQ=255)                                                                            tGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCGGCCGCCGAGCAGTTGAcc                                                                >  4:31738/1‑149 (MQ=255)                                                                                   ccAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCGGCCGCCGAGCAGTTGACCCAc                                                             <  3:290133/145‑1 (MQ=255)                                                                                   ccAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCGGCCGCCGAGCAGTTGACCCAc                                                             >  4:290133/1‑145 (MQ=255)                                                                                          cAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCGGCCGCCGAGCAGTTGACCCACTGGCAATCCgg                                                  >  4:323219/1‑149 (MQ=255)                                                                                           aGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCGGCCGCCGa                                                                          <  8:83163/124‑1 (MQ=255)                                                                                           aGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCGGCCGCCGa                                                                          >  7:83163/1‑124 (MQ=255)                                                                                                     cAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCGGCCGCCGAGTAGTTGACCCACTGGCAATCCGGCCAGGCCCAgg                                       <  7:35622/149‑1 (MQ=255)                                                                                                      aGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCGGCCGCCGAGCAGTTGACCCACTGGCAATCCGGCCAGGCCCAggg                                      >  6:235253/1‑149 (MQ=255)                                                                                                          cccTGCAGGAAGAAAAAGAGCGTGCGCAGATTACcctgcagggcgctggcaaaggcctggcgctgggccaacagcttgctggagcggcgccaggcaatggcgatcaggaacattgcggtcagcaggttggtgatcagcagcacccgcag                                  <  2:32421‑M2/149‑116 (MQ=255)                                                                                                           ccTGCAGGAAGAAAAAGAGCGTGCGCAGATTACcctgcagggcgctggcaaaggcctggcgctgggccaacagcttgctggagcggcgccaggcaatggcgatcaggaacattgcggtcagcaggttggtgatcagcagcacccgcag                                  <  2:275402‑M2/148‑116 (MQ=255)                                                                                                           ccTGCAGGAAGAAAAAGAGCGTGCGCAGATTACcctgcagggcgctggcaaaggcctggcgctgggccaacagcttgctggagcggcgccaggcaatggcgatcaggaacattgcggtcagcaggttggtga                                                  <  4:135905‑M2/132‑100 (MQ=255)                                                                                                           ccTGCAGGAAGAAAAAGAGCGTGCGCAGATTACcctgcagggcgctggcaaaggcctggcgctgggccaacagcttgctggagcggcgccaggcaatggcgatcaggaacattgcggtcagcaggttggtga                                                  >  3:135905‑M2/1‑33 (MQ=255)                                                                                                                       aaaaGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCGGCCGCCGAGCAGTTGACCCACTGGCAATCCGGCCAGGCCCAGGGCCTGCCGCTGTCGGCa                      <  3:226711/148‑1 (MQ=255)                                                                                                                         aaGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCGGCCGCCGAGCAGTTGACCCACTGGCAATCCGGCCAGGCCCAGGGCCTGCCGCTGTCGGCACTg                   >  5:327435/1‑149 (MQ=255)                                                                                                                          agagCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCGGCCGCCGAGCAGTTGACCCACTGGCAATCCGGCCAGGCCCAGGGCCTGCCGCTGTCGGCACTGt                  >  7:135902/1‑149 (MQ=255)                                                                                                                                        ttACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCGGCCGCCGAGCAGTTGACCCACTGGCAATCCGGCCAGGCCCAGGGCCTGCCGCTGTCGGCACTGTTCAGCCTGGTGGAt    >  1:231126/1‑149 (MQ=255)                                                                                                                                           cccTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCGGCCGCCGAGCAGTTGACCCACTGGCAATCCGGCCAGGCCCAGGGCCTGCCGCTGTCGGCACTGTTCAGCCTGGTGGATGa  <  3:323219/148‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                    TGCGGGTGCTGCTGATCACCAACCTGCTGACCGCAATGTTCCTGATCGCCATTGCCTGGCGCCGCTCCAGCAAGCTGTTGGCCCAGCGCCAGGCCTTTGCCAGCGCCCTGCAGGAAGAAAAAGAGCGTGCGCAGATTACCCTGCAGGCCATCGGGGATGCGGTGATTACAACCGATGTCGAGGGCAATATCGGCTACATGAACCCGGCCGCCGAGCAGTTGACCCACTGGCAATCCGGCCAGGCCCAGGGCCTGCCGCTGTCGGCACTGTTCAGCCTGGTGGATGA  >  NC_002947/1964468‑1964753

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.