New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2050559 =	43 (0.810)	4 (0.110)	4/180	NT	17.6%	intergenic (‑52/+123)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
	?	NC_002947	2050669 =	7 (0.190)					intergenic (‑162/+13)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein

GGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑CCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGA  >  NC_002947/2050566‑2050806                                                                                                        |                                                                                                                                           GGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAg                                                                                               <  7:250897‑M1/149‑1 (MQ=255)                  AACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑Cccgcccgc                                                                             <  5:237736‑M1/149‑1 (MQ=255)                    CCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATAAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑CCCGCCCgcgg                                                                           <  2:218285‑M1/149‑1 (MQ=255)                     ccgctcctacaggcaccccgccgtcttcgggctctgtgacatccccgtaggagcgggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAg                                                                                               <  4:180306‑M2/46‑1 (MQ=255)                     ccgctcctacaggcaccccgccgtcttcgggctctgtgacatccccgtaggagcgggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAg                                                                                               >  3:180306‑M2/84‑129 (MQ=255)                     CCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑CCCGCCCgcggc                                                                          <  2:191322‑M1/149‑1 (MQ=255)                       gctcctacaggcaccccgccgtcttcgggctctgtgacatccccgtaggagcgggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGAc                                                                                                 <  4:121745‑M2/44‑1 (MQ=255)                       gctcctacaggcaccccgccgtcttcgggctctgtgacatccccgtaggagcgggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGAc                                                                                                 >  3:121745‑M2/82‑125 (MQ=255)                           CTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑CCCGCCCGCGGCGCAAGc                                                                    >  6:237736‑M1/1‑149 (MQ=255)                           CTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑CCCGCCCGCGGCGCAAGc                                                                    <  7:62266‑M1/149‑1 (MQ=255)                             ACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑CCCGCCCGCGGCGCAAGCg                                                                   <  8:206449‑M1/148‑1 (MQ=255)                              CGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑CCCGCCCGCGGCGCAAGCgg                                                                  >  7:206449‑M1/1‑148 (MQ=255)                              CGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑CCCGCCCGCGGCGCAAGCg                                                                   >  8:62266‑M1/1‑147 (MQ=255)                              CGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑CCCGCCCGCGGCGCAAGCGGa                                                                 >  1:191322‑M1/1‑149 (MQ=255)                                         caGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑CCCGCCCGCGGCGCAAGCg                                                                   >  3:308063/1‑136 (MQ=255)                                         caGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑CCCGCCCGCGGCGCAAGCg                                                                   <  4:308063/136‑1 (MQ=255)                                             gCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCCGCCCGCGGCGCAAGCGGATACGGCTGcgccgc                                                   <  1:218285/149‑1 (MQ=255)                                                cGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑CCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAg                                                >  6:116544/1‑148 (MQ=255)                                                 gAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑CCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGa                                               >  5:287953/1‑148 (MQ=255)                                                     aCGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑CCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAacg                                           >  2:50736/1‑148 (MQ=255)                                                      cggcggGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑CCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAacgca                                         <  5:116544/149‑1 (MQ=255)                                                                ccTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑CCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCca                               <  8:250897/149‑1 (MQ=255)                                                                   gtaggagcgggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑CCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCAcag                            >  1:304027‑M2/38‑149 (MQ=255)                                                                      ggagcgggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑CCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCAcagca                          <  2:304027‑M2/114‑1 (MQ=255)                                                                      ggagcgggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑CCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCAcagca                          <  1:50736‑M2/114‑1 (MQ=255)                                                                           gggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑CCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGcaac                     >  6:191992‑M2/30‑148 (MQ=255)                                                                             gttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑CCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAag                  >  6:108111‑M2/28‑149 (MQ=255)                                                                                             gcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑CCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGa  <  6:287953‑M2/138‑1 (MQ=255)                                                                                                        |                                                                                                                                           GGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCT‑CCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGA  >  NC_002947/2050566‑2050806

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.