New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2301453 =	0 (0.000)	97 (1.880)	71/248	NT	100%	intergenic (‑97/‑234)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2925429 =	NA (NA)					intergenic (‑177/+388)	PP_2563/PP_2564	antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase

CTGGTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTCC  >  NC_002947/2925287‑2925569                                                                                                                                               |                                                                                                                                              ctggTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCAcc                                                                                                                                          >  7:186519/1‑148 (MQ=255)              gCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGc                                                                                                                           >  6:213918/1‑149 (MQ=255)                tAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCa                                                                                                                                        >  6:145748/1‑135 (MQ=255)                tAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCa                                                                                                                                        <  5:145748/135‑1 (MQ=255)                  gTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGACTgcg                                                                                                                       <  3:46623/149‑1 (MQ=255)                            gctgATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGcaca                                                                                                             <  6:120052/149‑1 (MQ=255)                            gctgATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGcaca                                                                                                             <  6:21629/149‑1 (MQ=255)                                     gcCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAg                                                                                                                                       >  4:256808/1‑115 (MQ=255)                                     gcCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAg                                                                                                     >  5:65828/1‑148 (MQ=255)                                       cAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGAGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAGCAGGAt                                                                                                  >  4:257361/1‑149 (MQ=255)                                        aaTATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATg                                                                                                 <  4:119932/149‑1 (MQ=255)                                            tttGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCa                                                                                             >  6:137078/1‑149 (MQ=255)                                             ttGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCAt                                                                                            >  5:198690/1‑149 (MQ=255)                                                  ggCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGt                                                                                       >  5:26138/1‑149 (MQ=255)                                                   gCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTc                                                                                      <  3:138481/149‑1 (MQ=255)                                                       ccTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAg                                                                                    <  6:198690/147‑1 (MQ=255)                                                        cTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATc                                                                                 >  7:257349/1‑149 (MQ=255)                                                        cTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATc                                                                                 >  7:252497/1‑149 (MQ=255)                                                         ttGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACa                                                                                                      <  3:35290/127‑1 (MQ=255)                                                         ttGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACa                                                                                                      >  4:35290/1‑127 (MQ=255)                                                            cGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGa                                                                                          <  1:349076/136‑1 (MQ=255)                                                            cGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGa                                                                                          >  2:349076/1‑136 (MQ=255)                                                             gATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCAc                                                                            <  8:186519/149‑1 (MQ=255)                                                                 gCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTg                                                                               >  4:67937/1‑142 (MQ=255)                                                                 gCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTg                                                                               <  3:67937/142‑1 (MQ=255)                                                                      gCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATc                                                                     >  7:94411/1‑147 (MQ=255)                                                                       cAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCgag                                                                  <  5:213918/149‑1 (MQ=255)                                                                        aGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATc                                                                     >  2:1876/1‑145 (MQ=255)                                                                          gTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAAc                                                                                                       >  2:29563/1‑109 (MQ=255)                                                                                  ccGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGTTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGaaaa                                                        <  7:34788/148‑1 (MQ=255)                                                                                  ccGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGaa                                                          >  8:34788/1‑146 (MQ=255)                                                                                    gCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCa                                                     <  6:65828/149‑1 (MQ=255)                                                                                      aaGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGaaaa                                                        <  6:210264/144‑1 (MQ=255)                                                                                      aaGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAgagat                                                   >  5:210264/1‑145 (MQ=255)                                                                                      aaGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCAtt                                                   >  1:36829/1‑149 (MQ=255)                                                                                       aGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTc                                                  <  2:36829/149‑1 (MQ=255)                                                                                       aGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTc                                                  <  8:94411/149‑1 (MQ=255)                                                                                             cccccATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGAc                                            <  6:26138/149‑1 (MQ=255)                                                                                             cccccATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGAc                                            >  3:99266/1‑149 (MQ=255)                                                                                                       aCCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCggg                                   >  2:100653/1‑148 (MQ=255)                                                                                                             cTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCg                                     <  7:282705/140‑1 (MQ=255)                                                                                                             cTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCg                                     >  8:282705/1‑140 (MQ=255)                                                                                                             cTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCa                            <  8:252497/149‑1 (MQ=255)                                                                                                             cTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCa                            <  8:257349/149‑1 (MQ=255)                                                                                                                aCCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAgcc                         >  4:10182/1‑149 (MQ=255)                                                                                                                 cccGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAgccg                        >  2:196501/1‑149 (MQ=255)                                                                                                                              cGGTTGTTCCATGGGAGATCACCCAGCCCTTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATc                                                                     >  1:207058/1‑92 (MQ=255)                                                                                                                              cGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATc                                                                     <  2:207058/91‑1 (MQ=255)                                                                                                                                        aTGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTcc  >  5:169412/1‑148 (MQ=32)                                                                                                                                               |                                                                                                                                              CTGGTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCC‑TTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTCC  >  NC_002947/2925287‑2925569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.