New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2792854 | 55 (1.040) | 4 (0.080) | 4/242 | NT | 7.1% | coding (184/240 nt) | PP_5524 | hypothetical protein |
? | NC_002947 | = 2792876 | 52 (1.030) | coding (206/240 nt) | PP_5524 | hypothetical protein |
CTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGATCAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTGGGTTGCCCTGGCTACGCTGGTGGCCATGGAAGTTGTACTGGGCAT > NC_002947/2792728‑2793024 | cTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGATCAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGa > 6:209558/1‑149 (MQ=255) cAGGCCGAGAAATCCGCGCAGCAGATGCTCGATCAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGagaagaaaga < 6:278105/149‑1 (MQ=255) aGGCCGAGAAATCCGCGCAGCAGATGCTCGATCAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGagaagaaagaa < 5:198223/149‑1 (MQ=255) aGGCCGAGAAATCCGCGCAGCAGATGCTCGATCAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGagaagaaag > 8:162133/1‑147 (MQ=255) gCCGAGAAATCCGCGCAGCAGATGCTCGATCAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGagaagaaagaaga < 5:263373/149‑1 (MQ=255) cGAGAAATCCGCGCAGCAGATGCTCGATCAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGagaagaaagaagaa > 1:294605/1‑148 (MQ=255) gagaAATCCGCGCAGCAGATGCTCGATCAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCgaga > 5:256385/1‑136 (MQ=255) gagaAATCCGCGCAGCAGATGCTCGATCAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCgaga < 6:256385/136‑1 (MQ=255) aTCCGCGCAGCAGATGCTCGATCAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAgg < 7:162133/149‑1 (MQ=255) tCGATCAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGagaaga < 2:68205/117‑1 (MQ=255) tCGATCAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGagaaga > 1:68205/1‑117 (MQ=255) aTCAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGAtgcc < 8:240347‑M2/107‑5 (MQ=255) gCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGGGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGctgctg > 5:364729/1‑147 (MQ=255) cgcgCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGGGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAgg < 6:364729/149‑1 (MQ=255) gCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACaa > 5:274305/1‑149 (MQ=255) caagcaagCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCCCTGCTGCAGGATTTGAACAATg < 7:53187/149‑1 (MQ=255) aagcaagcCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATg > 3:150050/1‑148 (MQ=255) gcaagcCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCaa > 6:141713/1‑121 (MQ=255) gcaagcCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCaa < 5:141713/121‑1 (MQ=255) cATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTg > 3:23712/1‑149 (MQ=255) tCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGAt > 6:304900/1‑128 (MQ=255) tCGACGACACCAACAAGGCTCCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGAt < 5:304900/128‑1 (MQ=255) acacCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACt < 6:274305/149‑1 (MQ=255) cacCAACAAGGCTGCCCAGCAGGCGATGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTc < 1:225220/149‑1 (MQ=255) acCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTcg > 2:59548/1‑149 (MQ=255) acCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTcg > 1:314739/1‑149 (MQ=255) aacaaGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTcgccg > 5:253199/1‑149 (MQ=255) aacaaGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTcgccg > 1:316357/1‑149 (MQ=255) aacaaGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTcgccg > 1:32560/1‑149 (MQ=255) aacaaGGCTGCCCAGCAGGCGCTAAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAAAATGCCGAGAAGAAAGAAGAAATCAAGGAAATCTGACCCCAACCGCTGCTGCAGGAATTGAACAATGGAATATTTGCTGGAACTcgccg > 1:99899/1‑149 (MQ=255) aacaaGACTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGa > 8:172601/1‑129 (MQ=255) aacaaGACTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGa < 7:172601/129‑1 (MQ=255) ggCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGc > 4:207373/1‑149 (MQ=255) gCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGCTGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGCCCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGcc > 6:302974/1‑149 (MQ=255) cccAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCt < 1:211791/147‑1 (MQ=255) cccAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTAc < 1:59548/149‑1 (MQ=255) ccAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGAccc > 1:215598/1‑88 (MQ=255) ccAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGAccc < 2:215598/88‑1 (MQ=255) ggCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTgg < 2:314739/149‑1 (MQ=255) gcTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTGGGtt < 3:207373/149‑1 (MQ=255) gagAAGCCATCTGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTGGGTTGCCCt < 6:109313/147‑1 (MQ=255) gCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTGGGTTGCCCt < 3:319323/149‑1 (MQ=255) cGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGAtgccgatggcttcgctcagcgcctgctgggcagccttgttggtgtcgtcgatggcttgcttggccgactgcgcggcctgatcgagcatctgctgcgcggatttctc < 1:195771‑M2/142‑107 (MQ=255) cGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGAtgccgatggcttcgctcagcgcctgctgggcagccttgttggtgtcgtcgatggcttgcttggccgactgcgcggcctgatcgagcatctgctgcgcggatttctc > 2:195771‑M2/1‑36 (MQ=255) cATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTGGGTTGCCCTGGCTACg > 6:106710/1‑149 (MQ=255) aTCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCgctgct > 6:24228/1‑77 (MQ=255) aTCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCgctgct < 5:24228/77‑1 (MQ=255) aTCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTg < 2:128345/132‑1 (MQ=255) aTCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTg > 1:128345/1‑132 (MQ=255) aTCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTGGGTTGCCCTGGCTACGc > 2:239543/1‑149 (MQ=255) gCAGCGAAGGGCAGAAGCCCAAGGAtgccgatggcttcgctcagcgcctgctgggcagccttgttggtgtcgtcgatggcttgcttggccgactgcgcggcctgatcgagcatctgctgcg > 8:128154‑M2/1‑25 (MQ=255) gCAGCGAAGGGCAGAAGCCCAAGGAtgccgatggcttcgctcagcgcctgctgggcagccttgttggtgtcgtcgatggcttgcttggccgactgcgcggcctgatcgagcatctgctgcg < 7:128154‑M2/121‑97 (MQ=255) gAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTGGGTTGCCCTGGCTACGCTGGTGGCCa > 7:203087/1‑149 (MQ=255) aaGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTGGGTTGCCCTGGCTACGCTGGTGGCCAt < 6:253199/149‑1 (MQ=255) gCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTGGGTTGCCCTGGCTACGCTGGTGGCCATGGaa < 2:99899/149‑1 (MQ=255) gCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTGGGTTGCCCTGGCTACGCTGGTGGCCATGGaa < 4:23712/149‑1 (MQ=255) aGCCCAAGGATTCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTGGGTTGCCCTGGCTACGCTGGTGGCCATGGAAGTTg < 1:239543/148‑1 (MQ=255) ccAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGccc < 6:93335/101‑1 (MQ=255) ccAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGccc > 5:93335/1‑101 (MQ=255) ccAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTGGGTTGCCCTGGCTACGCTGGTGGCCATGGAAGTTGTACt < 8:203087/149‑1 (MQ=255) cAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTTGCCCTACCGCCTGGGTTGCCCTGGCTACGCTGGTGGCCATGGAAGTTGTACTg > 2:15997/1‑149 (MQ=255) cAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTGGGTTGCCCTGGCTACGCTGGTGGCCATGGAAGTTGTACTg > 6:259782/1‑149 (MQ=255) aTGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTGGGTTGCCCTGGCTACGCTGGTGGCCATGGAAGTTGTACTGGGCAt < 5:259782/149‑1 (MQ=255) | CTGGCAGGCTGCGACCAGGCCGAGAAATCCGCGCAGCAGATGCTCGATCAGGCCGCGCAGTCGGCCAAGCAAGCCATCGACGACACCAACAAGGCTGCCCAGCAGGCGCTGAGCGAAGCCATCGGCAGCGAAGGGCAGAAGCCCAAGGATGCCGAGAAGAAAGAAGAAATCCAGGAAATCTGACCCCAACCGCTGCTGCAGGATTTGAACAATGGAATATTTGCTGGAACTCGCCGCTAGCCCTACCGCCTGGGTTGCCCTGGCTACGCTGGTGGCCATGGAAGTTGTACTGGGCAT > NC_002947/2792728‑2793024 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |