New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2890776	40 (0.760)	4 (0.080)	4/244	NT	8.4%	coding (116/819 nt)	tam	trans‑aconitate methyltransferase
	?	NC_002947	= 2890817	49 (0.970)					coding (157/819 nt)	tam	trans‑aconitate methyltransferase

CTAGGCACATAGTCCGCCCAAAGGAGCCGCACATGGCCTGGTCCGCCAACCAGTATTCCCTGTTCGAAGACGAACGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACATGATCGACAAGGCCCGTGAGCGCAAGCGGCTGTGCATCCCGCGTGTGCGCACGGTCATTGC  >  NC_002947/2890671‑2890959                                                                                                                                                   |                                                                                                                                                 cTAGGCACATAGTCCGCCCAAAGGAGCCGCACATGGCCTGGTCCGCCAACCAGTATTCCCTGTTCGAAGACGAACGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTg                                                                                                                                                 >  6:142947‑M2/1‑147 (MQ=255)                 cccAAAGGAGCCGCACATGGCCTGGTCCGCCAACCAGTATTCCCTGTTCGAAGACGAACGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGa                                                                                                                              >  2:149271/1‑149 (MQ=255)                  ccAAAGGAGCCGCACATGGCCTGGTCCGCCAACCAGTATTCCCTGTTCGAAGACGAACGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGAc                                                                                                                             <  2:179329/149‑1 (MQ=255)                    aaaGGAGCCGCACATGGCCTGGTCCGCCAACCAGTATTCCCTGTTCGAAGACGAACGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGAcc                                                                                                                            >  2:278464/1‑148 (MQ=255)                      aGGAGCCGCACATGGCCTGGTCCGCCAACCAGTATTCCCTGTTCGAAGACGAACGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGaa                                                                                                                         <  2:153954/149‑1 (MQ=255)                             gCACATGGCCTGGTCCGCCAACCAGTATTCCCTGTTCGAAGACGAACGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGtgctgc                                                                                                                  >  1:165198/1‑149 (MQ=255)                             gCACATGGCCTGGTCCGCCAACCAGTATTCCCTGTTCGAAGACGAACGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGtgctgc                                                                                                                  <  8:142841/149‑1 (MQ=255)                             gCACATGGCCTGGTCCGCCAACCAGTATTCCCTGTTCGAAGACGAACGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGtgctgc                                                                                                                  <  1:149271/149‑1 (MQ=255)                                    gCCTGGTCCGCCAACCAGTATTCCCTGTTCGAAGACGAACGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCg                                                                                                           >  6:284697/1‑149 (MQ=255)                                      cTGGTCCGCCAACCAGTATTCCCTGTTCGAAGACGAACGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGtg                                                                                                                      <  2:116531/136‑1 (MQ=255)                                          tCCGCCAACCAGTATTCCCTGTTCGAAGACGAACGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTAccc                                                                                                     >  1:267683/1‑149 (MQ=255)                                                aaCCAGTATTCCCTGTTCGAAGACGAACGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGc                                                                                               >  6:173631/1‑149 (MQ=255)                                                 aCCAGTATTCCCTGTTCGAAGACGAACGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGcc                                                                                              <  5:284697/149‑1 (MQ=255)                                                   cAGTATTCCCTGTTCGAAGACGAACGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGcc                                                                                              >  2:176823/1‑147 (MQ=255)                                                           ccTGTTCGAAGACGAACGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTgc                                                                                                                                                <  8:212490‑M2/91‑3 (MQ=255)                                                           ccTGTTCGAAGACGAACGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACgg                                                                                    <  1:176823/149‑1 (MQ=255)                                                              gTTCGAAGACGAACGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCAc                                                                                 >  7:260741/1‑149 (MQ=255)                                                               ttCGAAGACGAACGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACt                                                                                <  2:267683/149‑1 (MQ=255)                                                                        gAACGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGa                                                                       >  4:46072/1‑149 (MQ=255)                                                                        gAACGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCACCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACg                                                                                     >  6:6835/1‑135 (MQ=255)                                                                        gAACGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCACCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACg                                                                                     <  5:6835/135‑1 (MQ=255)                                                                          aCGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGAcc                                                                     >  6:233204/1‑149 (MQ=255)                                                                            gCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCg                                                                   <  2:165198/149‑1 (MQ=255)                                                                              acacGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGa                                                                 <  3:46072/149‑1 (MQ=255)                                                                                 cgcgCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAACCCACGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGAc                                                                <  1:278464/149‑1 (MQ=255)                                                                                 cgcgCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACAt                                                              <  7:33757/149‑1 (MQ=255)                                                                                 cgcgCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACAt                                                              <  3:227207/149‑1 (MQ=255)                                                                                       gTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACATGATCGa                                                        >  5:99891/1‑149 (MQ=255)                                                                                             gACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAg                                                                                           <  7:305596/108‑1 (MQ=255)                                                                                             gACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAg                                                                                           >  8:305596/1‑108 (MQ=255)                                                                                                 tGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTgcggcaatcaggtcgcgtacggcgcgtgtgcgttcgtcttcgaacagggaatactggttggcggaccaggccatgtgcggctcctttgggcg                                                      <  6:124646‑M2/143‑93 (MQ=255)                                                                                                 tGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTgcggcaatcaggtcgcgtacggcgcgtgtgcgttcgtcttcgaacagggaatactggttggcggaccaggccatgtgcggctcctttgggcg                                                      >  5:124646‑M2/1‑51 (MQ=255)                                                                                                   aTTGCCGCCCTCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACATGATCGACAAGGCCCGTGa                                            <  8:260741/149‑1 (MQ=255)                                                                                                       ccgccATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTgcggcaatcaggtcgcgtacggcgcgtgtgcgttcgtcttcgaacagggaatactggttggcggaccaggccatgtgc                                                                    >  1:98488‑M2/1‑45 (MQ=255)                                                                                                       ccgccATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTgcggcaatcaggtcgcgtacggcgcgtgtgcgttcgtcttcgaacagggaatactggttggcggaccaggccatgtgc                                                                    <  2:98488‑M2/123‑79 (MQ=255)                                                                                                       ccgccATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACATGATCGACAAGGc                                                  >  5:169921/1‑139 (MQ=255)                                                                                                       ccgccATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACATGATCGACAAGGc                                                  <  6:169921/139‑1 (MQ=255)                                                                                                       ccgccATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACATGATCGACAAGGCCCGTGAgcg                                         >  6:81402/1‑148 (MQ=255)                                                                                                        cgccATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCg                                                                   >  1:241898/1‑121 (MQ=255)                                                                                                        cgccATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCg                                                                   <  2:241898/121‑1 (MQ=255)                                                                                                        cgccATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACATGATCGACAAGGCCCGTGAgcgc                                        >  7:285038/1‑148 (MQ=255)                                                                                                        cgccATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACATGATCGACAAGGCCCGTGAgcgc                                        >  6:129487/1‑148 (MQ=255)                                                                                                               ccGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACATGATCGACAAGGCCCGTGAGCGCAAGCGGCt                                <  5:233204/149‑1 (MQ=255)                                                                                                                      ggCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACATGACCGACAAGGCCCGTGAGCGCAAGCGGCTGTGCATc                         <  5:173631/149‑1 (MQ=255)                                                                                                                            tacgccacgccaCCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGTCCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACATGATCGACAAGGCCCGTGAGCGCAAGCGGCTGTGCATCCCGCgt                   <  5:304706/147‑1 (MQ=255)                                                                                                                                    gccacCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACATGATCGACaa                                                     <  4:249287/107‑1 (MQ=255)                                                                                                                                    gccacCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACATGATCGACaa                                                     >  3:249287/1‑107 (MQ=255)                                                                                                                                    gccacCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACATGATCGACAAGGCCCGTGAGCGCAAGCGGCTGTGCATCCCGCGTGTGCGCAc           >  4:201131/1‑149 (MQ=255)                                                                                                                                     ccacCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACATGATCGACAAGGCCCGTGAGCGCAAGCGGCTGTGCATCCCGCGTGTGCGCACg          <  6:99891/149‑1 (MQ=255)                                                                                                                                       acCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACATGAt                                                           <  7:109622/98‑1 (MQ=255)                                                                                                                                       acCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACATGAt                                                           >  8:109622/1‑98 (MQ=255)                                                                                                                                        ccGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACATGATCGACAAGGCCCGTGAGCGCAAGCGGCTGTGCATCCCGCGTGTGCGCACGGTc       <  5:129487/149‑1 (MQ=255)                                                                                                                                        ccGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACATGATCGACAAGGCCCGTGAGCGCAAGCGGCTGTGCATCCCGCGTGTGCGCACGGTc       <  5:81402/149‑1 (MQ=255)                                                                                                                                         cGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACATGATCGACAAGGCCCGTGAGCGCAAGCGGCTGTGCATCCCGCGTGTGCGCACGGTCa      >  8:293532/1‑149 (MQ=255)                                                                                                                                             cTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACATGATCGACAAGGCCCGTGAGCGCAAGCGGCTGTGCATCCCGCGTGTGCGCACGGTCATTGc  <  3:201131/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                 CTAGGCACATAGTCCGCCCAAAGGAGCCGCACATGGCCTGGTCCGCCAACCAGTATTCCCTGTTCGAAGACGAACGCACACGCGCCGTACGCGACCTGATTGCCGCCATCCCGCCACGGCCGGTGCGCCACGCCACCGACCTGGGGTGCGGCCCCGGCAA‑‑CTCGACCGAAGTGCTGCTGCAGCGTTACCCCGATGCCCAGGTGACGGCACTGGACAGCGACCCGGACATGATCGACAAGGCCCGTGAGCGCAAGCGGCTGTGCATCCCGCGTGTGCGCACGGTCATTGC  >  NC_002947/2890671‑2890959

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.