| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4876313 | 53 (1.000) | 3 (0.060) | 3/228 | NT | 5.7% | intergenic (+151/+286) | PP_4284/pucM | transporter/5‑hydroxyisourate hydrolase |
| ? | NC_002947 | = 4876478 | 52 (1.100) | intergenic (+316/+121) | PP_4284/pucM | transporter/5‑hydroxyisourate hydrolase | |||||
GATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCAAAGGACCTACGAAGATTCTTCTAGCGACCAACTAGCTTCCACGATAGGTCGAA > NC_002947/4876332‑4876620 | gATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCAGCCACCACCGCATTCGCGGGTAAACCCCCACCGACCACGGGGTGGACAGTTGGACACAGCCCGGCgt < 1:168891‑M2/149‑3 (MQ=255) aGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCgtaggag < 5:160604‑M2/149‑8 (MQ=255) tAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCAc > 8:62969/1‑149 (MQ=255) gAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCCCTCCTACCACGGGGTGGACAGTTTGACACAGCCCGTCGTAGGAGCGGGTTCACCcg > 6:219565/1‑149 (MQ=255) ttCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTAACCCGCGAaga‑g > 1:199029/1‑149 (MQ=255) tCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑gg > 7:332753/1‑149 (MQ=255) ccGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCgg < 6:227976/149‑1 (MQ=255) ccGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCgg > 5:227976/1‑149 (MQ=255) ccGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCgg > 8:147821/1‑149 (MQ=255) gccggccCTGGTGGCAAATCCCTACCCGCCGTTCACCGTTGCTGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAAc < 2:168891/149‑1 (MQ=255) gccggccCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAAc > 2:55086/1‑149 (MQ=255) ccggccCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACg < 7:292050/149‑1 (MQ=255) ccTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCaaaa < 1:55086/149‑1 (MQ=255) tgctgGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCaaaaa > 4:317676/1‑148 (MQ=255) gCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAAcagca < 1:176428/149‑1 (MQ=255) gCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAAcagc < 3:117089/148‑1 (MQ=255) aCCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGaaaaa > 3:270119/1‑148 (MQ=255) ccgTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGccc < 5:219565/149‑1 (MQ=255) cGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGAc < 8:247311/129‑1 (MQ=255) cGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGAc > 7:247311/1‑129 (MQ=255) ttGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTga < 7:62969/149‑1 (MQ=255) ccgccACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTgaga < 7:147821/148‑1 (MQ=255) ccgccACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTgaga < 6:160604/148‑1 (MQ=255) gccACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAAc < 3:281823/106‑1 (MQ=255) gccACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAAc > 4:281823/1‑106 (MQ=255) caccGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAaga‑g > 6:148310/1‑86 (MQ=255) caccGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAaga‑g < 5:148310/86‑1 (MQ=255) caccGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTgag < 1:178679/140‑1 (MQ=255) caccGCATTCGCGGGTAAACCCCCTCCAACCACGGGGTGGACAGTTTGACACAGCCCGTCGTAGGAGCCGGTTGACCCGCGAAGA‑GGCCCGCACAAGCAACGCAAAAAACAGCAGACGAAAAAAAACCCCCCAGTGTgagaagatccg > 2:178679/1‑141 (MQ=255) ccGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCA‑CCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCAAAg > 8:293064/1‑149 (MQ=255) aTTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCAAAGGAc < 6:89614/149‑1 (MQ=255) cccGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCA‑CCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCAAAGGACCTACGAAGAttctt < 7:293064/149‑1 (MQ=255) cGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCAAAGGACCTACGAAGAttcttc < 4:270119/149‑1 (MQ=255) cTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCAAAGGACCTACGAAGATTCTTCTa < 8:332753/149‑1 (MQ=255) tACCACGGGGTGGACAGTTGGACACAGCCCGTCgtaggagcgggtttacccgcgaatgcggtggtggcggcaacggtgaacggcgggtagggattggccagcagggccggcctcttcgcgggt > 8:171676‑M2/1‑33 (MQ=255) tACCACGGGGTGGACAGTTGGACACAGCCCGTCgtaggagcgggtttacccgcgaatgcggtggtggcggcaacggtgaacggcgggtagggattggccagcagggccggcctcttcgcgggt < 7:171676‑M2/123‑91 (MQ=255) tACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCaaa < 1:315628/124‑1 (MQ=255) tACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCaaa > 2:315628/1‑124 (MQ=255) gggTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCAAAGGAc > 8:144807/1‑121 (MQ=255) gggTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCAAAGGAc < 7:144807/121‑1 (MQ=255) gTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGATGGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCAAAGGACCTACGAAGATTCTTCTAGCGACCAACTAg > 1:83092/1‑149 (MQ=255) gTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGaaaa < 4:314812/86‑1 (MQ=255) gTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGaaaa > 3:314812/1‑86 (MQ=255) aCAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCaaa > 6:27754/1‑111 (MQ=255) aCAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCaaa < 5:27754/111‑1 (MQ=255) aCAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCAAAGGACCTACGAAGATTCTTCTAGCGACCAACTAGCTTc > 5:125596/1‑148 (MQ=255) cAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGGGAGCGGGCCAAAGGACCTACGAAGATTCTTCTAGCGACCAACTAGCTTCCa > 2:33370/1‑149 (MQ=255) gACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCAAAGGACCTACGAAGATTCTTCTAGCGACCAACTAGCTTCCACGATa < 6:125596/148‑1 (MQ=255) acacAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCggg < 7:3568/98‑1 (MQ=255) acacAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCggg > 8:3568/1‑98 (MQ=255) acaGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCAAAGGACCTACGAAGAttcttc > 2:144973/1‑120 (MQ=255) acaGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCAAAGGACCTACGAAGAttcttc < 1:144973/120‑1 (MQ=255) acaGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCAAAGGACCTACGAAGATTCTTCTAGCGACCAACTAGCTTCCACGATAGGTc < 2:83092/149‑1 (MQ=255) aGCCCGTCgtaggagcgggttcacccgcgaatacggtggcggcagcaacggtgaacggcgggtggggattggcccgaagggccggccctttagcgggtgaacccgctactaccacgggcggtatccaactgtccacccccggcggaaaa < 8:145430‑M2/149‑142 (MQ=255) aGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCAAAGGACCTACGAAGAttcttc < 4:34600/118‑1 (MQ=255) aGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCAAAGGACCTACGAAGAttcttc > 3:34600/1‑118 (MQ=255) aGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCAAAGGACCTACGAAGATTCTTCTAGCGACCAACTAGCTTCCAc < 6:240832/139‑1 (MQ=255) aGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCAAAGGACCTACGAAGATTCTTCTAGCGACCAACTAGCTTCCAc > 5:240832/1‑139 (MQ=255) ccGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCAGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTCTGAGAGCGGGCCAAAGGACCTACGAAGATTCTTCTAGCGACCAACTAGCTTCCACGATAGGTCGaa > 8:98291/1‑147 (MQ=255) cgtcgtAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCAAAGGACCTACGAAGAttc < 1:310335/111‑1 (MQ=255) cgtcgtAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCAAAGGACCTACGAAGAttc > 2:310335/1‑111 (MQ=255) | GATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGA‑GGCCGGCACAGGCAACGCAAAAAACAGCAGACGAAAAAAAGCCCGCCAGTGTGAGAGCGGGCCAAAGGACCTACGAAGATTCTTCTAGCGACCAACTAGCTTCCACGATAGGTCGAA > NC_002947/4876332‑4876620 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |