New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5417913 =	57 (1.080)	5 (0.100)	5/242	NT	9.6%	coding (1158/1368 nt)	PP_4758	MFS transporter
	?	NC_002947	5417958 =	40 (0.800)					coding (1113/1368 nt)	PP_4758	MFS transporter

CCGCCAGGCCGTACAGCCCGCCCTGGATCGAGCCAGTCTGCTGCTCCAGCAAGCCGAAGGTGGTGGGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCG‑GCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCT  >  NC_002947/5417810‑5418100                                                                                                                                                     |                                                                                                                                                ccGCCAGGCCGTACAGCCCGCCCTGGATCGAGCCAGTCTGCTGCTCCAGCAAGCCGAAGGTGGTGGGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTgg                                                                                                                                                 <  5:59284/149‑1 (MQ=255) catgttcatgtccaccacgggtgggccggtgtttgccttcgtcgccgtgtgcttcgccgcgatcggcttcaagtcagcgtcgtcactgttctggccaatccccCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTgg                                                                                                                                                 >  2:266297‑M1/104‑149 (MQ=255)    ccAGGCCGTACAGCCCGCCCTGGATCGAGCCAGTCTGCTGCTCCAGCAAGCCGAAGGTGGTGGGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGGTCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTgggg                                                                                                                                               >  7:190755/1‑148 (MQ=255)          cGTACAGCCCGCCCTGGATCGAGCCAGTCTGCTGCTCCAGCAAGCCGAAGGTGGTGGGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGc                                                                                                                                        <  5:69489/149‑1 (MQ=255)           gTACAGCCCGCCCTGGATCGAGCCAGTCTGCTGCTCCAGCAAGCCGAAGGTGGTGGGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGcc                                                                                                                                       <  7:91/149‑1 (MQ=255)           gTACAGCCCGCCCTGGATCGAGCCAGTCTGCTGCTCCAGCAAGCCGAAGGTGGTGGGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGc                                                                                                                                        >  4:132306/1‑148 (MQ=255)                 cccgcccTGGATCGAGCCAGTCTGCTGCTCCAGCAAGCCGAAGGTGGTGGGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGaa                                                                                                                                   >  5:116085/1‑147 (MQ=255)                   cgcccTGGATCGAGCCAGTCTGCTGCTCCAGCAAGCCGAAGGTGGTGGGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGt                                                                                                                               >  2:346378/1‑149 (MQ=255)                     cccTGGATCGAGCCAGTCTGCTGCTCCAGCAAGCCGAAGGTGGTGGGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTga                                                                                                                             <  8:231415/149‑1 (MQ=255)                        tGGATCGAGCCAGTCTGCTGCTCCAGCAAGCCGAAGGTGGTGGGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTgacga                                                                                                                          >  3:75744/1‑149 (MQ=255)                            tCGAGCCAGTCTGCTGCTCCAGCAAGCCGAAGGTGGTGGGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCt                                                                                                                      <  7:212054/149‑1 (MQ=255)                             cGAGCCAGTCTGCTGCTCCAGCAAGCCGAAGGTGGTGGGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCt                                                                                                                      >  1:300856/1‑148 (MQ=255)                              gAGCCAGTCTGCTGCTCCAGCAAGCCGAAGGTGGTGGGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGa                                                                                                                    <  7:10231/149‑1 (MQ=255)                               aGCCAGTCTGCTGCTCCAGCAAGCCGAAGGTGGTGGGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGAc                                                                                                                   <  3:132306/149‑1 (MQ=255)                                    gTCTGCTGCTCCAGCAAGCCGAAGGTGGTGGGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGAc                                                                                                                   >  6:110492/1‑144 (MQ=255)                                    gTCTGCTGCTCCAGCAAGCCGAAGGTGGTGGGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGAc                                                                                                                   <  5:110492/144‑1 (MQ=255)                                               cAGCAAGCCGAAGGTGGTGGGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATcgcg                                                                                                    <  6:306909/148‑1 (MQ=255)                                               cAGCAAGCCGAAGGTGGTGGGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCgcgg                                                                                                   <  8:190755/149‑1 (MQ=255)                                                   aaGCCGAAGGTGGTGGGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTCACGACGCTGACTTGAAGCCGACCGCGGCGaa                                                                                               <  6:116085/149‑1 (MQ=255)                                                    aGCCGAAGGTGGTGGGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGc                                                                                                                       >  3:297770/1‑124 (MQ=255)                                                    aGCCGAAGGTGGTGGGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGc                                                                                                                       <  4:297770/124‑1 (MQ=255)                                                        gAAGGTGGTGGGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGcaca                                                                                          >  7:62117/1‑149 (MQ=255)                                                               gtggGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGcgac                                                                                   <  1:346378/149‑1 (MQ=255)                                                                  ggggCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCgcggc                                                                                                  >  4:246547/1‑131 (MQ=255)                                                                  ggggCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCgcggc                                                                                                  <  3:246547/131‑1 (MQ=255)                                                                   gggCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAg                                                                               <  8:194675/149‑1 (MQ=255)                                                                     gCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAgg                                                                              >  5:67741/1‑148 (MQ=255)                                                                       aaCGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCa                                                                            >  3:232906/1‑148 (MQ=255)                                                                          gAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAaca                                                                        >  7:199246/1‑149 (MQ=255)                                                                               cgccgAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCG‑Gc                                                                  <  2:300856/149‑1 (MQ=255)                                                                               cgccgAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCG‑Gc                                                                  <  6:67741/149‑1 (MQ=255)                                                                                       ttGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCG‑GCCCACCCgt                                                          <  1:42942/149‑1 (MQ=255)                                                                                         gCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCG‑GCCCACCCgtg                                                         <  4:75744/148‑1 (MQ=255)                                                                                           cgaccgaGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCG‑GCCCACCCgtggtg                                                      <  8:62117/149‑1 (MQ=255)                                                                                             accgaGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCG‑GCCCACCCGTGGTGGa                                                    >  7:330004/1‑149 (MQ=255)                                                                                                 aGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCG‑GCCCACCCGTGGTGGAc                                                   <  6:132842/146‑1 (MQ=255)                                                                                                 aGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCG‑GCCCACCCGTGGTGGAc                                                   >  5:132842/1‑146 (MQ=255)                                                                                                   ttGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCG‑GCCCACCCGTGGTGGACATGaa                                              <  3:332110/149‑1 (MQ=255)                                                                                                       ccagggctatctggacgcccgcatcgctgcggcggtgattgccctgGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCG‑GCCCACCCGTGGTGGACATGAACATg                                          >  2:266297‑M2/47‑149 (MQ=255)                                                                                                        cagggctatctggacgcccgcatcgctgcggcggtgattgccctgGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCG‑GCCCACCCGTGGTGGACATGAACATGc                                         >  4:196880‑M2/46‑149 (MQ=255)                                                                                                         agggctatctggacgcccgcatcgctgcggcggtgattgccctgGGGGATTGGCCAGAACAGTGACGCCGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAACCACCG‑GCCCACGCGTGGGGGACATGAACATTcc                                        >  8:63922‑M2/45‑149 (MQ=255)                                                                                                                   ccgccgCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAgg                                                                              <  7:254299/102‑1 (MQ=255)                                                                                                                   ccgccgCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAgg                                                                              >  8:254299/1‑102 (MQ=255)                                                                                                                           gCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACATTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCG‑GCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACcagcag                      <  8:199246/149‑1 (MQ=255)                                                                                                                            catcgctgcggcggtgattgccctgGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCG‑GCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAgg                     <  3:196880‑M2/124‑1 (MQ=255)                                                                                                                                    cggcggtgattgccctgGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCGTGCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCg               <  1:266297‑M2/131‑1 (MQ=255)                                                                                                                                        ccAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCG‑GCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCAcc         >  3:19678/1‑149 (MQ=255)                                                                                                                                         cAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCG‑GCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCAcc         <  4:232906/148‑1 (MQ=255)                                                                                                                                          aGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCG‑GCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACcagc                        >  7:61804/1‑132 (MQ=255)                                                                                                                                          aGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCG‑GCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACcagc                        <  8:61804/132‑1 (MQ=255)                                                                                                                                               tccctgGGGTATTGGCAATAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACAGCGACGAAGGCAAACACCG‑GCCCACCCGTGGTGGACATTAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCct  <  6:224361‑M2/143‑1 (MQ=255)                                                                                                                                                 cctgGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACAGCGACGAAGGCAAACACCG‑GCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCTGCCACCCAGGCct  >  5:224361‑M2/5‑147 (MQ=255)                                                                                                                                                 cctgGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACAGCGACGAAGGCAAACACCG‑GCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCct  <  6:229533‑M2/143‑1 (MQ=255)                                                                                                                                                 cctgGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACAGCGACGAAGGCAAACACCG‑GCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCct  >  5:229533‑M2/5‑147 (MQ=255)                                                                                                                                                     |                                                                                                                                                CCGCCAGGCCGTACAGCCCGCCCTGGATCGAGCCAGTCTGCTGCTCCAGCAAGCCGAAGGTGGTGGGGGCAACGAAACCGCCGAGGTTGCCGACCGAGTTGATCAGGGCAATCACCGCCGCAGCGATGCGGGCGTCCAGATAGCCCTGGGGGATTGGCCAGAACAGTGACGACGCTGACTTGAAGCCGATCGCGGCGAAGCACACGGCGACGAAGGCAAACACCG‑GCCCACCCGTGGTGGACATGAACATGCCCGTGGCAGCGACCAGCAGGGCGCCGGCCACCCAGGCCT  >  NC_002947/5417810‑5418100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.