New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5786495	42 (0.800)	4 (0.090)	4/206	NT	9.5%	intergenic (+38/‑93)	PP_5068/trxC	hypothetical protein/thioredoxin
	?	NC_002947	= 5786532	42 (0.980)					intergenic (+75/‑56)	PP_5068/trxC	hypothetical protein/thioredoxin

CCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGG  >  NC_002947/5786387‑5786676                                                                                                                                                  |                                                                                                                                                 ccGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttc                                                                                                                                               >  7:241177‑M2/1‑146 (MQ=255)   gggATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgc                                                                                                                                             >  1:299818‑M2/1‑144 (MQ=255)     gATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgg                                                                                                                                           >  5:60986‑M2/1‑142 (MQ=255)      aTGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcggg                                                                                                                                          >  6:288326‑M2/1‑141 (MQ=255)            gCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgggcacgcc                                                                                                                                    >  8:120431‑M2/1‑135 (MQ=255)                  gCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgggcacgcccgctcc                                                                                                                              <  7:266956‑M2/149‑21 (MQ=255)                              ccgGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAAcc                                                                                                                  <  5:333283/149‑1 (MQ=255)                              ccgGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAAcc                                                                                                                  >  6:132821/1‑149 (MQ=255)                                    tGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTCCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGaa                                                                                                             <  1:169966/148‑1 (MQ=255)                                        gCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCaa                                                                                                        >  8:75298/1‑149 (MQ=255)                                         aaaGCAAGTGTAAATAAGCTGCTCTTCCTGATTAGCGCCTAATCCTGTTGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAac                                                                                                       <  8:59077/148‑1 (MQ=25)                                           aGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAacac                                                                                                     <  5:132821/149‑1 (MQ=255)                                            gCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGAGAACCCAACAcc                                                                                                    >  6:261003/1‑149 (MQ=255)                                              aCCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAAcc                                                                                                                  <  3:296857/133‑1 (MQ=255)                                              aCCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGATCGCGGGCACGCCCGCTCCCACAAGGAAAcc                                                                                                                  >  4:296857/1‑133 (MQ=255)                                                 tGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCg                                                                                                   >  8:250717/1‑145 (MQ=255)                                                    aaaTCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCCCGAAGCAGGCAACCTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCACCCACAACGAAACCCTGAACCCAACACCGGAGATg                                                                                             >  5:186032/1‑148 (MQ=37)                                                     aagcAGCTGGTCTTCCTGATTAGCGCCTATTCGTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTAGCCGGTGTTCGGGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGaa                                                                                           <  4:211288/146‑1 (MQ=25)                                                      aTCAGCTGCTCTTCGTGATTAGGGCCGAATCCTGTGGGTGCGGGCGTGCCCGCGAAGCTGGCAACGTGATGGATTGCACGGGCTTCGCCGGTGTTGGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGata                                                                                          <  6:186032/149‑3 (MQ=37)                                                           ctgctCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCTCGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATgacc                                                                                     <  1:261151/149‑1 (MQ=255)                                                           ctgctCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATgacc                                                                                     <  7:250717/149‑1 (MQ=255)                                                                    cTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACt                                                                             <  7:75298/148‑1 (MQ=255)                                                                       aTTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgggcacgcccgctcc                                                                                                                              >  6:176980‑M2/1‑76 (MQ=255)                                                                       aTTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGt                                                                          >  3:18495/1‑148 (MQ=255)                                                                         tAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCAc                                                                              <  6:97262/142‑1 (MQ=255)                                                                         tAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCAc                                                                              >  5:97262/1‑142 (MQ=255)                                                                              ccGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGaa                                                                                                             >  3:4700/1‑106 (MQ=255)                                                                              ccGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGAAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGaa                                                                                                             <  4:4700/106‑1 (MQ=255)                                                                                        tgGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATc                                                                      <  1:224304/135‑1 (MQ=255)                                                                                        tgGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATc                                                                      >  2:224304/1‑135 (MQ=255)                                                                                              cGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGGCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACgg                                                  <  8:266956/149‑1 (MQ=255)                                                                                                 gCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCt                                               >  2:143678/1‑149 (MQ=255)                                                                                                       ccGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgggcacgcccgctcccacaggattcggcgctaatcaggaagagcagctgatttccaggtgcttgccccactccggcggtcgctcggcgtaggct                                               <  8:25684‑M2/143‑100 (MQ=255)                                                                                                       ccGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgggcacgcccgctcccacaggattcggcgctaatcaggaagagcagctgatttccaggtgcttgccccactccggcggtcgctcggcgtaggct                                               >  7:25684‑M2/1‑44 (MQ=255)                                                                                                       ccGCGAAGCAGGCAACGTGAGGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCg                                         >  2:239624/1‑149 (MQ=255)                                                                                                         gcgAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGttcgcgggcacgcccgctcccacaggattcggcgctaatcaggaagagcagctgatttccaggtgcttgccccactccggcggtcgctcggcgtaggcttgcatccc                                       <  3:284872‑M2/149‑108 (MQ=255)                                                                                                           gAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTg                                     <  1:143678/149‑1 (MQ=255)                                                                                                            aaGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATc                                                                      <  3:247555/115‑1 (MQ=255)                                                                                                               cAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCa                                                           <  3:4907/123‑1 (MQ=255)                                                                                                               cAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCccg                                 >  8:224714/1‑149 (MQ=255)                                                                                                               cAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAACGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCa                                                           >  4:4907/1‑123 (MQ=255)                                                                                                                 ggCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCccgcc                               <  4:18495/149‑1 (MQ=255)                                                                                                                  gCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGAt                                                                                              >  6:283311/1‑85 (MQ=255)                                                                                                                  gCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGAt                                                                                              <  5:283311/85‑1 (MQ=255)                                                                                                                          aTGGATTGCACCGGCTTCGCCGGTGttcgcgggcacgcccgctcccacaggattcggcgctaatcaggaagagcagctgatttccaggtgcttgccccactccggcggtcgctcggcgtaggcttgcatcccgggctgttcctcgaaa                       >  4:284872‑M2/1‑25 (MQ=255)                                                                                                                             gATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTggg                    <  1:239624/148‑1 (MQ=255)                                                                                                                               gagCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGa                 <  3:164000/147‑1 (MQ=255)                                                                                                                                 gCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTgg                                                                           >  7:209692/1‑89 (MQ=255)                                                                                                                                 gCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTgg                                                                           <  8:209692/89‑1 (MQ=255)                                                                                                                                  cACCGGCTTCGCCGGTGTTCGCGGGCCCGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTCGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGCGCGCCTGGGCGATgc              >  1:158861/1‑149 (MQ=255)                                                                                                                                         ttCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATgaccgacc                                                                                 <  6:18037/75‑1 (MQ=255)                                                                                                                                         ttCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATgaccgacc                                                                                 >  5:18037/1‑75 (MQ=255)                                                                                                                                            gCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGc    >  2:237651/1‑149 (MQ=255)                                                                                                                                              cGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACGCCGGAGATGAAACGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCgg  >  3:115906/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                 CCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCAACGTGATGGATTGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGG  >  NC_002947/5786387‑5786676

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.