New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5947087 =	41 (0.780)	4 (0.080)	4/232	NT	9.6%	intergenic (‑79/+127)	ubiD/rho	3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/transcription termination factor Rho
	?	NC_002947	5947192 =	38 (0.790)					intergenic (‑184/+22)	ubiD/rho	3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/transcription termination factor Rho

AGTGTAGCGCCGTTCGGGCCTTGTTTGGGGGTGAAAATGCATTGGGGCCGCTTTGCATCCCTTCGCGGAAGCCCGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGCAGCTTGCGCAGAATCCACAT  >  NC_002947/5947047‑5947336                                                                                                                                                  |                                                                                                                                                 cgtgtAGCGCCGTTCGGGCCTTGTTTGGGGGTGAAAATGCATTGGGGCCGCTTTGCATCCCTTCGCGGAAGCCCGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCcaatcaat                                                                                                                                               <  7:145232/148‑1 (MQ=255)                       gTTTGGGGGTGAAAATGCATTGGGGCCGCTTTGCATCCCTTCGCGGAAGCCCGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTAc                                                                                                                         >  4:102245/1‑149 (MQ=255)                       gTTTGGGGGTGAAAATGCATTGGGGCCGCTTTGCATCCCTTCGCGGAAGCCCGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTAc                                                                                                                         >  6:83122/1‑149 (MQ=255)                       gTTTGGGGGTGAAAATGCATTGGGGCCGCTTTGCATCCCTTCGCGGAAGCCCGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTAc                                                                                                                         >  6:88222/1‑149 (MQ=255)                            ggggTGAAAATGCATTGGGGCCGCTTTGCATCCCTTCGCGGAAGCCCGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTgc                                                                                                                     <  2:77134/148‑1 (MQ=255)                                   aaaTGCATTGGGGCCGCTTTGCATCCCTTCGCGGAAGCCCGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATc                                                                                                             <  1:347172/149‑1 (MQ=255)                                        cATTGGGGCCGCTTTGCATCCCTTCGCGGAAGCCCGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCACAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACa                                                                                                         <  8:329685/148‑1 (MQ=255)                                             GGGCCGCTTTGCATCCCTTCGCGGAAGCCCGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGgaag                                                                                                    <  8:246125‑M1/148‑1 (MQ=255)                                              ggccgccttgcggcccttcgcgggcaaggccgctcctgcacaggtcattgcggcccttgtaggagcgggcttccgcgaagggatgcaaagcggccccaatCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGgaagaa                                                                                                  >  1:195627‑M2/101‑149 (MQ=255)                                                ccgccttgcggcccttcgcgggcaagcccgctcctgcacaggtcattgcggcccttgtaggagcgggcttccgcgaagggatgcaaagcggccccaatCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAAc                                                                                                 >  8:301368‑M2/99‑148 (MQ=255)                                                 CGCTTTGCATCCCTTCGCGGAAGCCCGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACt                                                                                                <  4:307653‑M1/148‑1 (MQ=255)                                                    tttGCATCCCTTCGCGGAAGCCCGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATcc                                                                                                                                             >  4:335973/1‑100 (MQ=255)                                                    tttGCATCCCTTCGCGGAAGCCCGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATcc                                                                                                                                             <  3:335973/100‑1 (MQ=255)                                                        cATCCCTTCGCGGAAGCCCGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCCTCGCCAGGAAGAACTCATCGttg                                                                                        >  1:258449/1‑149 (MQ=255)                                                           cccttcgcgggcaagcccgctcctgcacaggtcattgcggcccttgtaggagcgggcttccgcgaagggatgcaaagcggccccaatCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGttggtc                                                                                     <  7:301368‑M2/62‑1 (MQ=255)                                                           cccTTCGCGGAAGCCCGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGa                                                                                                           <  1:164637/127‑1 (MQ=255)                                                           cccTTCGCGGAAGCCCGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGa                                                                                                           >  2:170012/1‑127 (MQ=255)                                                           cccTTCGCGGAAGCCCGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGa                                                                                                           >  2:164637/1‑127 (MQ=255)                                                           cccTTCGCGGAAGCCCGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGa                                                                                                           <  1:170012/127‑1 (MQ=255)                                                                cgcgGAAGCCCGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGttggtcttg                                                                                  <  3:102245/147‑1 (MQ=255)                                                                 gcgGAAGCCCGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGttggtcttggtc                                                                               >  8:148749/1‑149 (MQ=255)                                                                       gCCCGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCGTCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTg                                                                         <  5:88222/149‑1 (MQ=255)                                                                       gCCCGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCGTCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTg                                                                         <  5:83122/149‑1 (MQ=255)                                                                       gCCCGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCtt                                                                          >  2:164604/1‑148 (MQ=255)                                                                         ccGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTg                                                                         <  1:147384/147‑1 (MQ=255)                                                                         ccGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTg                                                                         >  2:147384/1‑147 (MQ=255)                                                                               cTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTg                                                                   <  7:171170/147‑1 (MQ=255)                                                                                 ctgcacaggtcattgcggcccttgtaggagcgggcttccgcgaagggatgcaaagcggccccaatCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCg                                                                <  2:195627‑M2/83‑1 (MQ=255)                                                                                  cAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCg                                                                <  7:246125/147‑1 (MQ=255)                                                                                   aaGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGttggtcttggt                                                                                <  5:184961/130‑1 (MQ=255)                                                                                   aaGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGttggtcttggt                                                                                >  6:184961/1‑130 (MQ=255)                                                                                      ggCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAgg                                                          <  6:181526/149‑1 (MQ=255)                                                                                            aaTGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTc                                                     >  1:118316/1‑148 (MQ=255)                                                                                                aCCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATgg                                                <  7:148749/149‑1 (MQ=255)                                                                                                     tgCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAg                                             <  7:297759/147‑1 (MQ=255)                                                                                                      gCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGa                                                                        >  4:54874/1‑119 (MQ=255)                                                                                                        aGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGagt                                        >  5:45886/1‑147 (MQ=255)                                                                                                          gAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTc                                      >  1:47043/1‑149 (MQ=255)                                                                                                             cGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGt                                    <  1:171441/148‑1 (MQ=255)                                                                                                             cGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTc                                   <  1:164604/149‑1 (MQ=255)                                                                                                                 cTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATc                               <  3:307653/149‑1 (MQ=255)                                                                                                                      ccGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTg                          <  2:47043/149‑1 (MQ=255)                                                                                                                                ccGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGAtt                                        <  4:146714/125‑1 (MQ=255)                                                                                                                                 cGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCa                                              >  7:175464/1‑118 (MQ=255)                                                                                                                                 cGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCa                                              <  8:175464/118‑1 (MQ=255)                                                                                                                                              caatCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGCAGCTTGCgcagaataaatcg  >  1:44961‑M2/5‑143 (MQ=255)                                                                                                                                              caatCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGCAGCTTGCGCAGAATCcaca   >  1:3466‑M2/5‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                                 AGTGTAGCGCCGTTCGGGCCTTGTTTGGGGGTGAAAATGCATTGGGGCCGCTTTGCATCCCTTCGCGGAAGCCCGCTCCTACAAGGGCCGCAATGACCTGTGCAGGAGCGGGCTTGCCCGCGAAGGGCCGCAAGGCGGCCCCAATCAATCCAGCCTGAAACGCTCGCTTACTTGCGCTTCATCGACAGGAAGAACTCATCGTTGGTCTTGGTCTGCTTGAGCTTGTCGACCAGGAACTCGATGGCAGCGATTTCGTCCATCGGGTGCAGCAGCTTGCGCAGAATCCACAT  >  NC_002947/5947047‑5947336

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.