Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,214,890 | A→G | 6.9% | M269V (ATG→GTG) | mexD → | multidrug RND transporter MexD |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,214,890 | 0 | A | G | 6.9% | 163.3 / 2.5 | 58 | M269V (ATG→GTG) | mexD | multidrug RND transporter MexD |
Reads supporting (aligned to +/- strand): ref base A (25/29); new base G (2/2); total (27/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.38e-01 |
CGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACCGCGACGCTGGTCAAGGAGCGCTTGGCCGAGCTG > NC_002947/3214745‑3215027 | cGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATg < 4:231194/148‑1 (MQ=255) cagcaCGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCa > 2:92198/1‑149 (MQ=255) gcaCGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATc > 3:187070/1‑149 (MQ=255) ccGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCGTGGCCATCGGTAg < 6:37042/148‑1 (MQ=255) ccGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCGTGGCCATCGGTAg > 5:42250/1‑148 (MQ=255) ccGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCGTGGCCATCGGTAg < 6:42250/148‑1 (MQ=255) ccGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCGTGGCCATCGGTAg > 5:37042/1‑148 (MQ=255) ccGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGc > 1:132231/1‑149 (MQ=255) gTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCgag < 4:262801/149‑1 (MQ=255) tGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCgaga < 7:272968/149‑1 (MQ=255) ccAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGaa < 6:203460/148‑1 (MQ=255) ccAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGaa < 2:29740/148‑1 (MQ=255) aGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTa > 4:68178/1‑149 (MQ=255) aCCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGgcgc < 6:118138/148‑1 (MQ=255) ccGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGgcgcgc < 2:132231/149‑1 (MQ=255) cgcgACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGcc > 7:103997/1‑149 (MQ=255) cgcgACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGcc > 3:195393/1‑149 (MQ=255) cgcgACCCTGGCCGTACAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGcc > 3:255035/1‑149 (MQ=255) cccTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAAc < 3:68178/149‑1 (MQ=255) gCCGTGCAGGGCAGTCTCGACACCCCGGAAGCGTGCGCCGGCATCGTCCTGCGCGGCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTTGCGAGATCTACAACCTGTCGGCGCGCCTGAACGGc < 2:282727/147‑1 (MQ=255) ccGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCAc > 2:156506/1‑149 (MQ=255) gCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCcgg > 4:250482/1‑149 (MQ=255) gggCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCcggcgg > 2:123331/1‑149 (MQ=255) gCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTg < 4:195393/149‑1 (MQ=255) ctctCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCg > 2:38164/1‑119 (MQ=255) ctctCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCg < 1:38164/119‑1 (MQ=255) tctcGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCa < 5:236494/135‑1 (MQ=255) tctcGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCa > 6:236494/1‑135 (MQ=255) tcGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGCTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCcg < 1:92198/147‑1 (MQ=255) tcGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGGCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCcg < 5:261133/147‑1 (MQ=255) cacCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCcggcg < 2:165746/136‑1 (MQ=255) cacCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCcggcg > 1:165746/1‑136 (MQ=255) ccccGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGCTGTCcggtgcggtg > 4:230659/1‑149 (MQ=255) gAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGtt < 1:123331/149‑1 (MQ=255) aaGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTg > 6:228730/1‑149 (MQ=255) gcGGCATCGTCCTGCGCTCCAACCGCGTTGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTTCAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGgc < 3:230659/148‑1 (MQ=255) ccGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGgc > 2:290856/1‑97 (MQ=255) ccGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGgc > 7:166898/1‑149 (MQ=255) ccGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGgc < 3:250482/149‑1 (MQ=255) ccGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGgc < 8:103997/149‑1 (MQ=255) cGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGgcg > 1:226869/1‑149 (MQ=255) aTCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCgg < 5:254661/142‑1 (MQ=255) aTCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCgg > 6:254661/1‑142 (MQ=255) cTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAg < 2:72516/126‑1 (MQ=255) cTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAg > 1:72516/1‑126 (MQ=255) cTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCAt < 8:166898/149‑1 (MQ=255) cccGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCcggtg > 5:270697/1‑106 (MQ=255) cccGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCcggtg < 6:270697/106‑1 (MQ=255) cGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACCGCGACGc > 6:243315/1‑149 (MQ=255) ctGGCGCCAGCGTCCGGCTGGGTGCTGGGGCGCGCAGGGCCATCGGTAGCGAGAACTACAACCTGTCGGCTCGCCTTTCCGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACCGCGACGCTg < 4:255035/148‑1 (MQ=255) tCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACCGCGACGCTGGTc > 1:12952/1‑147 (MQ=255) ccAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGcc < 4:89753/125‑1 (MQ=255) ccAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGcc > 3:89753/1‑125 (MQ=255) cAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACCGCGACGCTGGTCaa < 5:228730/147‑1 (MQ=255) aGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACCGCGACGCTGGTCAAGGa > 8:142501/1‑149 (MQ=255) cGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACCGCGACGCTGGTCAAGGAGCGCtt < 2:226869/149‑1 (MQ=255) ggTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACCGCGACGCTAGTCAAGGAGCGCTTGGcc < 1:156506/147‑1 (MQ=255) aTGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACCGCGACGCTGGTCAAGGAGCGCTTGGCCGAGCTg < 7:142501/149‑1 (MQ=255) | CGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCACTCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCCAGACCGCGACGCTGGTCAAGGAGCGCTTGGCCGAGCTG > NC_002947/3214745‑3215027 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |