Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,300,162 | T→A | 11.4% | intergenic (+60/+22) | pvdQ → / ← lpxH | acyl‑homoserine lactone acylase PvdQ/UDP‑2,3‑diacylglucosamine hydrolase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,300,162 | 0 | T | A | 11.4% | 136.2 / 6.7 | 51 | intergenic (+60/+22) | pvdQ/lpxH | acyl‑homoserine lactone acylase PvdQ/UDP‑2,3‑diacylglucosamine hydrolase |
Reads supporting (aligned to +/- strand): ref base T (27/18); new base A (2/4); total (29/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.83e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ACCGAGGCGCAGATCAAGGCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCATCAGCTTGT > NC_002947/3300016‑3300305 | aCCGAGGCGCAGATCAAGGCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTg > 1:184376/1‑149 (MQ=255) ccGAGGCGCAGATCAATGCAGATACTGAGTACCGGGAAGTGGTGATCAGTGAGCTGGACAAGGGGGCGGTAGTCAGCCAACCCTGAGGCGTCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGc > 6:342562/1‑149 (MQ=255) cgcAGATCAAGGCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGCCTC‑GCGGGCAAGCCcgcag < 8:8808/149‑3 (MQ=39) gcAGATCAAGGCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCA‑TTCGAGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAg > 4:308376/1‑149 (MQ=255) gCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCTCGCGGGCAAGCCGGCAGGC‑CCCTGTag < 4:127866/149‑2 (MQ=38) gCAGAGCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAAt < 4:95019/149‑1 (MQ=255) gTACCGGGAAGTGTTGATCAGTGAGCGTGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCATCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGaaaa < 3:76562/148‑1 (MQ=255) gtggtgATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAACCCTGAGGCGTCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGgcg < 5:342562/149‑1 (MQ=255) tggtgATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCAAGTACGCGGGTAAACCCCCACAAAAAGGGGCAT‑CCGGGCTTGCCCGGGAGG‑CCCGGTAATGAAAGTAAAACACGAACGgcc > 1:282852/1‑148 (MQ=255) ggtgATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGgcgc < 2:184376/148‑1 (MQ=255) gtgATCAGTGAGCGGGACGAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAAcagggctt > 1:1100/1‑142 (MQ=255) cGGGACAAGGGGTCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCt < 8:152240/149‑1 (MQ=255) gggggCGGTAGTCAGCCAGCCCGGAGGCGTCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGCGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCa > 7:53943/1‑149 (MQ=255) gTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAgg > 3:139150/1‑149 (MQ=255) cagccagcCCTGAGGCGTCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCGAACTGAAAGCCCTGTTCGTCAACCTGCAAGGc < 3:308376/148‑1 (MQ=255) agccagccCTGAGGCGTCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGccc < 2:282852/149‑1 (MQ=255) agccagccCTGAGGCGTCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGccc < 8:147849/149‑1 (MQ=255) gccagccCTGAGGCGTCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGccc > 3:46723/1‑148 (MQ=255) ccagccCTGAGGCGTCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCaa > 7:157772/1‑149 (MQ=255) cccTGTGGGGTCAGCCTGGGCCGGCCCA‑TTCGGGGGTAACCCCGTTCCAACTGGGGCCG‑GGGGTTTTGCCGGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACgg < 5:192103/105‑1 (MQ=255) cccTGAGGCGTCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGTTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACgg > 6:192103/1‑105 (MQ=255) aGGCGTCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCgcggc < 1:109844/147‑1 (MQ=255) aGGCGTCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCgcggc > 2:109844/1‑147 (MQ=255) aGGCGTCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGcggcgg > 5:114039/1‑149 (MQ=255) tCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCa < 7:223642/120‑1 (MQ=255) tCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCa > 8:223642/1‑120 (MQ=255) ccTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCg > 2:281129/1‑149 (MQ=255) cGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCa < 8:157772/149‑1 (MQ=255) ccA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGa > 4:304648/1‑148 (MQ=255) gggTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTg > 6:128639/1‑149 (MQ=255) gggTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTg > 6:123233/1‑149 (MQ=255) gggTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTg < 6:114039/149‑1 (MQ=255) aaaCCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCgg > 6:139698/1‑149 (MQ=255) cccGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTg < 1:135821/149‑1 (MQ=255) ctgacattACAGGGCCTC‑GCGGGCAAGCCCGCAGGC‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTgg > 7:286276/8‑149 (MQ=37) acattACAGGGCCTC‑GCGGGCAAGCCCGC‑AGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGTGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCa > 6:237013/5‑148 (MQ=38) tACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCa < 1:88363/122‑1 (MQ=255) tACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCa > 2:88363/1‑122 (MQ=255) cAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGAc > 3:326122/1‑148 (MQ=255) aGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGc > 3:167306/1‑113 (MQ=255) aGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGc < 4:167306/113‑1 (MQ=255) aGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGAcc > 8:130197/1‑148 (MQ=255) gggCCT‑GCGGGCTTGCCCGCGAGGCCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCAt > 5:219056/1‑149 (MQ=255) gggCCT‑GCGGGCTTGCCCGCGAGGCCCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCAt > 3:342771/1‑149 (MQ=255) gggCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCATc > 7:250830/1‑149 (MQ=255) gCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCaa > 6:208927/1‑76 (MQ=255) gCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCaa < 5:208927/76‑1 (MQ=255) tcgCGGGCAAGCCCGC‑AGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAg < 4:283989/79‑1 (MQ=38) t‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCATCAGCtt > 4:146805/1‑149 (MQ=255) gCGGGCAAGCCCGC‑AGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGTGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCATCAGCTtgt < 5:237013/149‑1 (MQ=255) gggCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCATCAGCTtgt < 7:130197/148‑1 (MQ=255) | ACCGAGGCGCAGATCAAGGCAGATCCTGAGTACCGGGAAGTGGTGATCAGTGAGCGGGACAAGGGGGCGGTAGTCAGCCAGCCCTGAGGCGTCAGCCTGCGCCGGCCCA‑TTCGCGGGTAAACCCGCTCCTACAGGGGCCT‑GCGGGCTTGCCCGCGAGG‑CCCTGTAATGTCAGGAAAACTCGAACGGCGCCAACTGAAAGCCCTGTTCGTCAACCTGCAAGGCCCAACCGCGGCGGTCCCAGTCGCCCAGCACGATACGCCGTGCCGGCTGGCCATCGACCATCAGCTTGT > NC_002947/3300016‑3300305 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |