Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,423,566 | A→G | 7.7% | Q575R (CAG→CGG) | PP_3038 → | TraC domain‑containing protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,423,566 | 0 | A | G | 7.7% | 145.1 / 2.2 | 53 | Q575R (CAG→CGG) | PP_3038 | TraC domain‑containing protein |
Reads supporting (aligned to +/- strand): ref base A (25/23); new base G (2/2); total (27/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
AGCTGGGCGAATTGGACAGCTTCAACAAGGCAGAGAGCACCAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGT > NC_002947/3423419‑3423713 | aGCTGGGCGAATTGGACAGCTTCAACAAGGCAGAGAGCACCAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAg > 8:43520/1‑149 (MQ=255) cGAATTGGACAGCTTCAACAAGGCAGAGAGCACCAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGaa > 8:72777/1‑148 (MQ=255) cGAATTGGACAGCTTCAACAAGGCAGAGAGCACCAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAAt < 4:271822/149‑1 (MQ=255) ttcAGCTTGAAGATTGCAGTGAGCACGAAGGCCAAGCAATTCTTCTCGGCATGTATCGACAGTTACCGCGAAAGCTATGCGCGTAGAACGAGTGACGTGCCACGTCTGTGTGTTTTCGCGTGTACGACCAAGCTGGATTAATAGCTTa < 6:39115/146‑1 (MQ=255) gtctgCTTCTACAAGGCAGAGTGCACGTAGGCCAAGCAATTCTTCTCGGGATCTATCGACACGTACCGCGATAGCTATGGGCGTAGAACGAGGGACGTGCCACGTGAGTGTGTTTTCGGGGGTACCACCAACCATGATGAATACCTTa < 6:44384/144‑1 (MQ=255) aacaaGGCAGAGAGCACCAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCAc > 7:84368/1‑149 (MQ=255) caaGGCAGAGAGCACCAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCGGGATGAATACCTTAAGGACGCCACCg > 5:354216/1‑149 (MQ=255) caaGGCAGAGAGCACCAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCGGGATGAATACCTTAAGGACGCCACCg > 5:358983/1‑149 (MQ=255) caaGGCAGAGAGCACCAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCg > 4:135496/1‑149 (MQ=255) cAGAGAGCACCAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAAc < 8:167565/149‑1 (MQ=255) agagagCACCAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAAcc > 3:142021/1‑149 (MQ=255) agCACCAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCTAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCGGGATGAATACCTTAAGGACGCCACCGGTAACCGGCg < 6:354216/149‑1 (MQ=255) agCACCAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCGGGATGAATACCTTAAGGACGCCACCGGTAACCGGCg < 6:358983/149‑1 (MQ=255) aCCAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTa > 3:153342/1‑149 (MQ=255) ccAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTAt > 8:77459/1‑149 (MQ=255) cAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTAtt > 5:189640/1‑149 (MQ=255) ggCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGc < 3:135496/149‑1 (MQ=255) ggCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGc < 6:189640/149‑1 (MQ=255) gCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACACCACCGGTAACCGGCGTTATTGGcc < 4:118069/149‑1 (MQ=255) ccAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCg < 7:43520/149‑1 (MQ=255) cAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCgg > 5:309453/1‑149 (MQ=255) cAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCgg > 2:8583/1‑149 (MQ=255) aGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTc < 7:77459/149‑1 (MQ=255) gCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCg > 8:206785/1‑149 (MQ=255) aaTTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAAGCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCt < 4:142021/149‑1 (MQ=255) aTTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCtt < 6:15435/149‑1 (MQ=255) ttcttcTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTg > 3:52863/1‑149 (MQ=255) aTCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTAGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTg > 1:77773/1‑148 (MQ=255) tCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCTCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTgg > 6:35979/1‑122 (MQ=255) tCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTgg < 5:35979/122‑1 (MQ=255) tCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGAc < 6:309453/146‑1 (MQ=255) tCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCtt < 8:84368/149‑1 (MQ=255) acacTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCGCCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGaa < 8:81421/149‑1 (MQ=255) acacTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGaa < 1:26222/149‑1 (MQ=255) acacTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGaa > 8:129753/1‑149 (MQ=255) acacTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGaa < 2:14851/149‑1 (MQ=255) acacTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGaa < 7:206785/149‑1 (MQ=255) aTGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATAGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGt > 1:115718/1‑149 (MQ=255) ggCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGAc < 2:77773/149‑1 (MQ=255) gCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGAc > 4:332108/1‑148 (MQ=255) gAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTggg < 7:72777/149‑1 (MQ=255) aCGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAg < 1:8583/149‑1 (MQ=255) gCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAAAACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCa > 1:68236/1‑149 (MQ=255) aCGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATg > 5:159008/1‑148 (MQ=255) aCGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATg < 6:159008/148‑1 (MQ=255) aCGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGt < 4:52863/149‑1 (MQ=255) gtgtgtTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGc > 4:89827/1‑148 (MQ=255) tgtTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTAc > 7:316093/1‑148 (MQ=255) gcgGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCgg > 5:687/1‑149 (MQ=255) gcgGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAACGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTCCTACCAGGCCgg > 1:267708/1‑149 (MQ=255) cgGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGATATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGt > 4:205185/1‑149 (MQ=255) caccaACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCTTCAAGGTCCACCTTGACGc > 2:297578/1‑84 (MQ=38) caccaACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCTTCAAGGTCCACCTTGACGc < 1:297578/84‑1 (MQ=38) accaaccaGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCtg < 8:316093/149‑1 (MQ=255) caaccaGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCtggt > 6:192597/1‑149 (MQ=255) aaccaGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAg < 2:301072/79‑1 (MQ=255) aaccaGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAg > 1:301072/1‑79 (MQ=255) aaccaGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCtggtg > 6:223461/1‑149 (MQ=255) accaGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCtggtgg < 3:89827/149‑1 (MQ=255) aGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTggtgggt > 6:74775/1‑148 (MQ=255) aGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTggtgggt > 6:165400/1‑148 (MQ=255) | AGCTGGGCGAATTGGACAGCTTCAACAAGGCAGAGAGCACCAAGGCCAAGCAATTCTTCTCGGCATCTATCGACACTTACCGCGAAAGCTATGGGCGAAGAACGAGTGACGTGCCACGTCAGTGTGTTTTCGCGGGTACCACCAACCAGGATGAATACCTTAAGGACGCCACCGGTAACCGGCGTTATTGGCCGGTCGCTTGCGTCAAGGTGGACCTTGAAGCATTGCGTCGCGCTCGTGACCAGCTGTGGGCTGAGGCCATGTTCTGCTACCAGGCCGGTGATATCTGGTGGGT > NC_002947/3423419‑3423713 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |