| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,436,204 | T→A | 5.3% | W47R (TGG→AGG) | gpI → | tail formation protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,436,204 | 0 | T | A | 5.3% | 290.3 / 2.8 | 93 | W47R (TGG→AGG) | gpI | tail formation protein |
| Reads supporting (aligned to +/- strand): ref base T (43/45); new base A (2/3); total (45/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGGTGGTGACATGAGCCTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAGGCGGTTCGGGTCAACGCGGATT > NC_002947/3436056‑3436351 | aGGTGGTGACATGAGCCTGTTACCGCACAACTCCTCCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTTGCTGGCCt < 7:117617/149‑1 (MQ=255) gtggtgACATGAGCCTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTgg < 8:306824/149‑1 (MQ=255) gtggtgACATGAGCCTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTgg < 4:311260/149‑1 (MQ=255) tggtgACATGAGCCTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTggg < 1:280830/149‑1 (MQ=255) tggtgACATGAGCCTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCAGGCCAGCCAggg < 1:208816/149‑1 (MQ=255) gtgACATGAGCCTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCa > 6:313906/1‑149 (MQ=255) aTGAGCCTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑gg > 5:321721/1‑147 (MQ=255) aTGAGCCTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGaa < 4:110262/149‑1 (MQ=255) gAGCCTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAgg > 4:321560/1‑149 (MQ=255) gAGCCTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAgg > 6:239112/1‑149 (MQ=255) gCCTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATAATCCGGGGCGTGGCCGACTCGTCACGC‑GGCCGGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTc < 2:340323/149‑1 (MQ=255) ttACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAgg < 1:325420/148‑1 (MQ=255) ccGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCt < 5:56986/148‑1 (MQ=255) cGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTgg < 5:313906/149‑1 (MQ=255) gCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTggg < 2:292429/149‑1 (MQ=255) gCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTgg > 1:292429/1‑148 (MQ=255) caACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAgg > 8:304838/1‑149 (MQ=255) caACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAgg > 4:115716/1‑149 (MQ=255) ccAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGaa < 4:47522/123‑1 (MQ=255) ccAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTaca < 5:239112/149‑1 (MQ=255) ccAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTaca > 3:164309/1‑149 (MQ=255) ccAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTaca > 7:261286/1‑149 (MQ=255) cAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTacac < 6:321721/149‑1 (MQ=255) ttGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACAGTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGATCGTCGAGGGCTGGGAGGCGGCTTACACcga > 5:317113/1‑149 (MQ=255) gcCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTc < 6:201618/114‑1 (MQ=255) gcCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTc > 5:201618/1‑114 (MQ=255) tccTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAgc < 3:60995/146‑1 (MQ=255) cccTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAgg > 8:279524/1‑111 (MQ=255) cccTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAgg < 7:279524/111‑1 (MQ=255) cTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACCCCGACGACCAgc > 4:60995/1‑145 (MQ=255) tGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGcgccg‑c > 2:319493/1‑149 (MQ=255) aGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCcg‑cgcg < 8:206884/149‑1 (MQ=255) gcggcCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACcgac > 8:213249/1‑132 (MQ=255) gcggcCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACcgac < 7:213249/132‑1 (MQ=255) cgACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCcgc > 8:252962/1‑148 (MQ=255) gACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGa < 8:261286/149‑1 (MQ=255) gACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGa < 7:304838/149‑1 (MQ=255) ttGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGCCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGCCGGCTTACACCGACTACCAGCGCCG‑CGCGCTGATCCGCTAGGc > 5:207316/1‑148 (MQ=255) gccacgccccGGATAATGTCCGGGTCAAGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCAtt > 6:112842/8‑149 (MQ=255) ccTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTc < 5:87358/149‑1 (MQ=255) cTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTcc > 8:9681/1‑149 (MQ=255) ttGACCCGGACATTATCCGGGGCGTGGCGGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCg > 1:197314/1‑149 (MQ=255) ttGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCg > 3:262793/1‑149 (MQ=255) gACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCgg < 2:197314/148‑1 (MQ=255) aCCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGt < 6:65868/148‑1 (MQ=255) cccGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGtt > 4:117850/1‑148 (MQ=255) ccGGACATTATCCGGGGCGTGGCCGACTCGTCACGCGTGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGtt > 1:233464/1‑148 (MQ=255) ccGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCg > 3:342033/1‑144 (MQ=255) ccGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCg < 4:342033/144‑1 (MQ=255) ccGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTca > 1:313209/1‑149 (MQ=255) aTTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGATGCGGCTTACACCGACGACCAGCGCCGCCGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGa < 1:223893/149‑1 (MQ=255) aTTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGAc > 4:147945/1‑149 (MQ=255) aTTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGAc < 3:117850/149‑1 (MQ=255) tCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAg < 4:262793/149‑1 (MQ=255) cGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAgg < 3:321560/148‑1 (MQ=255) gCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGa < 4:73276/138‑1 (MQ=255) gCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGa > 3:73276/1‑138 (MQ=255) gTGGCCGACTCGTCACGC‑TGCCCGCCGAACTACC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGt > 7:318710/1‑149 (MQ=255) gCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTgg < 5:295999/69‑1 (MQ=255) gCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTgg > 6:295999/1‑69 (MQ=255) ccGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGgc < 7:252962/149‑1 (MQ=255) cTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGATGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGa < 3:115716/149‑1 (MQ=255) gTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCaa < 8:233834/129‑1 (MQ=255) gTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCaa > 7:233834/1‑129 (MQ=255) tCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCATGGGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCa > 1:242452/1‑134 (MQ=255) tCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCa < 2:242452/133‑1 (MQ=255) cACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGAt < 6:264219/97‑1 (MQ=255) gC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGTCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTcggcgg < 1:77313/149‑1 (MQ=255) gC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTcggcgg > 2:276336/1‑149 (MQ=255) gC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTcggcgg < 3:147945/149‑1 (MQ=255) tGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGtt > 5:209928/1‑111 (MQ=255) tGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGtt < 6:209928/111‑1 (MQ=255) ccgccgAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGCGCACGGTCGGCGCGATTCGGCGGGTGc > 2:332337/1‑148 (MQ=255) cgccgAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGc < 3:157111/97‑1 (MQ=255) cgccgAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGc > 4:157111/1‑97 (MQ=255) cgccgAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTc < 1:319493/149‑1 (MQ=255) tcgACCTTCCATGCCCAGGCCAGCCAGGGCAT‑‑GAAGTTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTc > 7:120122/2‑106 (MQ=21) tcgACCTTCCATGCCCAGGCCAGCCAGGGCAT‑‑GAAGTTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTc < 8:120122/105‑1 (MQ=21) ccgAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTc > 4:278080/1‑147 (MQ=255) cgACCTTCCATGCCCAGGCCAGCCAGGGCA‑‑GGAAGTTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGa > 7:118937/1‑132 (MQ=37) cgACCTTCCATGCCCAGGCCAGCCAGGGCA‑‑GGAAGTTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGa < 8:118937/132‑1 (MQ=37) cgAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAg < 1:276336/149‑1 (MQ=255) gAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAgg < 8:318710/149‑1 (MQ=255) aCTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAGGCg < 5:33727/149‑1 (MQ=255) cTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCCGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCAAGGTCGGCGCGATTCGGCGGGTGCGCAcggcgg > 6:26275/1‑149 (MQ=255) cTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCAAGGTCGGCGCGATTCGGCGGGTGCTCAAGGCgg > 6:21046/1‑149 (MQ=255) cc‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCcg‑cgcg < 2:223279/73‑1 (MQ=255) cc‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCcg‑cgcg > 1:223279/1‑73 (MQ=255) c‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAGGCGGTTCg > 7:179699/1‑149 (MQ=255) tGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAGGCGGTTCgg > 4:177577/1‑149 (MQ=255) cccTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAGGCGGTTCg > 3:212791/1‑146 (MQ=255) cccTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAGGCGGTTCg < 4:212791/146‑1 (MQ=255) cTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAGGCGGTTCGGGTCAACGCGGAtt < 2:313209/149‑1 (MQ=255) cTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAGGCGGTTCGGGTCAACGCGGAt > 2:29842/1‑148 (MQ=255) | AGGTGGTGACATGAGCCTGTTACCGCACAACGCCACCCAGTTGGAGCGCGCCCTGGAGGCGGCCGCCGACCTTGGCCTTGACCCGGACATTATCCGGGGCGTGGCCGACTCGTCACGC‑TGCCCGCCGAACTTCC‑TGCCCTGGCTGGCCTGGGCAT‑GGAAGGTCGAGGGCTGGGAGGCGGCTTACACCGACGACCAGCGCCG‑CGCGCTGATCCGCGAGGCCATTCCGGTTCACAAGACCAAGGGCACGGTCGGCGCGATTCGGCGGGTGCTCAAGGCGGTTCGGGTCAACGCGGATT > NC_002947/3436056‑3436351 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |