Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,761,053 | G→A | 7.0% | S134N (AGC→AAC) | PP_3325 → | ferric siderophore receptor |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,761,053 | 0 | G | A | 7.0% | 167.6 / 2.2 | 57 | S134N (AGC→AAC) | PP_3325 | ferric siderophore receptor |
Reads supporting (aligned to +/- strand): ref base G (26/27); new base A (2/2); total (28/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01 |
ACCCGCATCGACCGCGCCCTGGACTTTGCTGGCGGCGTCTCGCGGCAGAACAACTTCGGCGGCCTGACTTTCCTCAACTACAGTGTGCGCGGCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATCGTCACCAAGCGCCCCCAGGCCGAAGCCTTCAGTACCCTCACCCTCAGCG > NC_002947/3760905‑3761199 | accCGCATCGACCGCGCCCTGGACTTTGCTGGCGGCGTCTCGCGGCAGAACAACTTCGGCGGCCTGACTTTCCTCAACTACAGTGTGCGCGGCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAg < 1:84345/149‑1 (MQ=255) cGCATCGACCGCGCCCTGGACTTTGCTGGCGGCGTCTCGCGGCAGAACAACTTCGGCGGCCTGACTTTCCTCAACTACAGTGTGCGCGGCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTc > 2:122788/1‑149 (MQ=255) aTCGACCGCGCCCTGGACTTTGCTGGCGGCGTCTCGCGGCAGAACAACTTCGGCGGCCTGACTTTCCTCAACTACAGTGTGCGCGGCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGcc > 7:138417/1‑149 (MQ=255) aTCGACCGCGCCCTGGACTTTGCTGGCGGCGTCTCGCGGCAGAACAACTTCGGCGGCCTGACTTTCCTCAACTACAGTGTGCGCGGCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGcc < 3:133242/149‑1 (MQ=255) tCGACCGCGCCCTGGACTTTGCTGGCGGCGTCTCGCGGCAGAACAACTTCGGCGGCCTGACTTTCCTCAACTACAGTGTGCGCGGCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCg < 5:296534/149‑1 (MQ=255) gACCGCGCCCTGGACTTTGCTGGCGGCGTCTCGCGGCAGAACAACTTCGGCGGCCTGACTTTCCTCAACTACAGTGTGCGCGGCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGa < 4:80017/149‑1 (MQ=255) aCCGCGCCCTGGACTTTGCTGGCGGCGTCTCGCGGCAGAACAACTTCGGCGGCCTGACTTTCCTCAACTACAGTGTGCGCGGCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGac < 6:208931/149‑1 (MQ=255) gcCCTGGACTTTGCTGGCGGCGTCTCGCGGCAGAACAACTTCGGCGGCCTGACTTTCCTCAACTACAGTGTGCGCGGCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCTGACACCTc > 1:120334/1‑149 (MQ=255) tgttGGCGGCGTCTCGCGGCAGAACAACTTCGGCGGCCTGACTTTCCTCAACTACAGTGTGCGCGGCTTCACCACGGTCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGa < 1:122788/144‑1 (MQ=255) gCTGGCGGCGTCTCGCGGCAGAACAACTTCGGCGGCCTGACTTTCCTCAACTACAGTGTGCGCGGCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAgc < 5:36666/148‑1 (MQ=255) gcggcgTCTCGCGGCAGAACAACTTCGGCGGCCTGACTTTCCTCAACTACAGTGTGCGCGGCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATc < 3:241422/149‑1 (MQ=255) gTCTCGCGGCAGAACAACTTCGGCGGCCTGACTTTCCTCAACTACAGTGTGCGCGGCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGt > 8:67009/1‑149 (MQ=255) tcGCGGCAGAACAACTTCGGCGGCCTGACTTTCCTCAACTACAGTGTGCGCGGCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑Ct > 5:281610/1‑149 (MQ=255) gCAGAACAACTTCGGCGGCCTGACTTTCCTCAACTACAGTGTGCGCGGCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAg < 2:120334/149‑1 (MQ=255) acaacTTCGGCGGCCTGACTTTCCTCAACTACAGTGTGCGCGGCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCg < 8:138417/149‑1 (MQ=255) caacTTCGGCGGCCTGACTTTCCTCAACTACAGTGTGCGCGGCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCgg < 7:67009/149‑1 (MQ=255) caacTTCGGCGGCCTGACTTTCCTCAACTACAGTGTGCGCGGCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGAGCATc > 6:24516/1‑130 (MQ=255) cTTCGGCGGCCTGACTTTCCTCAACTACAGTGTGCGCGGCTTCACCACGGGCTAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCTGCTACTGCCCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTg < 1:261957/149‑1 (MQ=255) aCTTTCCTCAACTACAGTGTGCGCGGCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTAt < 6:281610/147‑1 (MQ=255) cTCAACTACAGTGTGCGCGGCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTgg > 8:297337/1‑149 (MQ=255) cTCAACTACAGTGTGCGCGGCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTgg > 7:124399/1‑149 (MQ=255) aaCTACAGTGTGCGCGGCTTCACCACGGGCGAGCTGTACAAGAACGGTTACGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGa > 2:96373/1‑149 (MQ=255) gcgcGGCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGAc > 6:301948/1‑149 (MQ=255) gcgGCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTg < 5:301948/149‑1 (MQ=255) gCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTc < 8:165437/149‑1 (MQ=255) caccacGGGCGAGCTGTACAAGAACGGTTCCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTGACTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCa < 1:96373/147‑1 (MQ=255) ccacGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATg > 4:280475/1‑117 (MQ=255) ccacGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATg < 3:280475/117‑1 (MQ=255) ccacGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATc > 4:307103/1‑149 (MQ=255) cacGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCg < 7:139251/134‑1 (MQ=255) cacGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCg > 8:139251/1‑134 (MQ=255) acGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATCGt < 3:307103/149‑1 (MQ=255) gCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATCGTCAc > 7:62644/1‑148 (MQ=255) gCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATCGTCAc > 1:244279/1‑148 (MQ=255) gCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAACTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGa > 8:128686/1‑131 (MQ=255) gCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAACTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGa > 4:56011/1‑131 (MQ=255) gCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAACTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGa < 3:56011/131‑1 (MQ=255) gCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAACTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGa < 7:128686/131‑1 (MQ=255) gCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATCGTCACCAAgc > 1:3979/1‑149 (MQ=255) gTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATCGTCACCAAGCGcc > 8:171668/1‑149 (MQ=255) tACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATCGTCACCAAGCGccc > 2:279720/1‑149 (MQ=255) cAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATCGTCACCAAGCGccccc > 6:303112/1‑149 (MQ=255) gAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTg < 1:84493/121‑1 (MQ=255) gAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTg > 2:84493/1‑121 (MQ=255) gAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATCGTCACCAAGCGCCCCCAgg > 8:9942/1‑149 (MQ=255) aaCGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATCGTCACCAAGCGCCCCCAGGc > 6:195172/1‑149 (MQ=255) cGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATCGTCACCAAGCGCCCCCAGGcc > 4:86058/1‑148 (MQ=255) gTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATCGTCACCAAGCGCCCCCAGGCCGaa < 5:195172/149‑1 (MQ=255) gTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATCGTCACCAAGCGCCCCCAGGCCGaa < 3:86058/149‑1 (MQ=255) gTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATCGTCACCAAGCGCCCCCAGGCCGaa < 2:244279/149‑1 (MQ=255) tttCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATCGTCACCAAGCGCCCCCAGGCCGAAg < 8:62644/149‑1 (MQ=255) gCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATc < 6:169600/120‑1 (MQ=255) gCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATc > 5:169600/1‑120 (MQ=255) gCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATCGTCACCAAGCGCCCCCAGGCCGAAGCCtt < 2:3979/149‑1 (MQ=255) aaCCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATCGTCACCAAGCGCCCCCAGGCCGAAGCCTTCAGTac > 5:148160/1‑149 (MQ=255) aaCCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATCGTCACCAAGCGCCCCCAGGCCGAAGCCTTCAGTa < 8:124399/148‑1 (MQ=255) cAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATCGTCACCAAGCGCCCCCAGGCCGAAGCCTTCAGTaccctcaccc < 6:148160/149‑1 (MQ=255) aGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATCGTCACCAAGCGCCCCCAGGCCGAAGCCTTCAGTACCCTCACCCTCAgcg > 1:154227/1‑148 (MQ=255) | ACCCGCATCGACCGCGCCCTGGACTTTGCTGGCGGCGTCTCGCGGCAGAACAACTTCGGCGGCCTGACTTTCCTCAACTACAGTGTGCGCGGCTTCACCACGGGCGAGCTGTACAAGAACGGTTTCGCCATCAACCGCGGCAGCTACAGCTCGCCGGACACCTCCAACATCGAGCGCATCGAAGTG‑CTCAAAGGCCCGGCTGCCAGCCTGTATGGCCGTGGCGACCCTGGCGGACTGGTCAACATCGTCACCAAGCGCCCCCAGGCCGAAGCCTTCAGTACCCTCACCCTCAGCG > NC_002947/3760905‑3761199 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |