Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 372,646 | C→G | 6.7% | intergenic (+66/‑113) | dgcA → / → dgcB | dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 372,646 | 0 | C | G | 6.7% | 188.7 / 2.8 | 59 | intergenic (+66/‑113) | dgcA/dgcB | dimethylglycine dehydrogenase subunit/dimethylglycine dehydrogenase subunit |
Reads supporting (aligned to +/- strand): ref base C (31/24); new base G (2/2); total (33/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.61e-01 |
TACCGCATCGGCGACTGCGTGGCCCAGCGCAACGTGCATGCGGCGA‑TCTACGACGCCTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCGGCGCAAGAATCCAGCTGTTTGTGGGAGCCTCCCATGTTGAACACCCTTCTACCCATCCTGCTGTTC > NC_002947/372500‑372791 | tACCGCATCGGCGACTGCGTGGCCCAGCGCAACGTGCATGCGGCGA‑TCTACGACGCCTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCAc > 4:123836/1‑149 (MQ=255) ccGCATCGGCGACTGCGTGGCCCAGCGCAACGTGCATGCGGCGA‑TCAACGACGCCTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACt > 8:76201/1‑148 (MQ=255) aTCGGCGACTGCGTGGCCCAGCGCAACGTGCATGCGGCGA‑TCTACGACGCCTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGacaa < 4:74662/149‑1 (MQ=255) gCGACTGCGTGGCCCAGCGCAACGTGCATGCGGCGA‑TCTACGACGCCTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACt > 6:72097/1‑149 (MQ=255) gACTGCGTGGCCCAGCGCAACGTGCATGCGGCGATTCTACGACGCCTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTg > 1:53231/1‑149 (MQ=255) aCTGCGTGGCCCAGCGCAACGTGCATGCGGCGA‑TCTACGACGCCTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGtt < 7:314314/149‑1 (MQ=255) gCCCAGCGCAACGTGCATGCGGCGA‑TCTACGACGCCTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGAcc > 4:20998/1‑149 (MQ=255) gCCCAGCGCAACGTGCATGCGGCGA‑TCTACGACGCCTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGAc < 7:76201/148‑1 (MQ=255) gCCCAGCGCAACGTGCATGCGGCGA‑TCTACGACGCCTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGAc < 3:123836/148‑1 (MQ=255) ccAGCGCAACGTGCATGCGGCGA‑TCTACGACGCCTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCgg < 5:72097/149‑1 (MQ=255) aaCGTGCATGCGGCGA‑TCTACGACGCCTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCCGGTCAGGCAACAGTGTTGTCAGTGCTGACGCAtt > 3:299486/1‑149 (MQ=25) gTGCATGCGGCGA‑TCTACGACGCCTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCCGGTCAGGCAACAGTGTTGTCAGTGCTGACGCATTcgc < 4:299486/149‑1 (MQ=21) cATGCGGCGA‑TCTACGACGCCTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCgg < 1:326093/148‑1 (MQ=255) aTGCGGCGA‑TCTACGACGCCTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTcgc < 4:339315/145‑1 (MQ=255) aTGCGGCGA‑TCTACGACGCCTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTcgc > 3:339315/1‑145 (MQ=255) aTGCGGCGA‑TCTACGACGCCTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGt < 2:53231/149‑1 (MQ=255) ggcgA‑TCTACGACGCCTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGt > 4:18382/1‑145 (MQ=255) ggcgA‑TCTACGACGCCTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGt < 3:18382/145‑1 (MQ=255) a‑TCTACGACGCCTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGc > 1:293771/1‑149 (MQ=255) cgacgCCTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTa < 4:84422/149‑1 (MQ=255) cgCCTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACAt < 3:20998/149‑1 (MQ=255) cTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCCGGTCAGGCAACAGTGTTGTCAGTGCTGACGCATTc > 7:264508/1‑124 (MQ=18) cTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCCGGTCAGGCAACAGTGTTGTCAGTGCTGACGCATTc < 8:264508/124‑1 (MQ=18) cTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGtc > 6:79031/1‑149 (MQ=255) tgCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTTAACCCCCAATTCCGAAACCAATCAAAACAATGTTGCATGACCGGACCAATACCCGGTTGAACCCGCTGTTACATGGGCCCataaac > 1:269908/1‑144 (MQ=255) cAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGAc < 1:153639/106‑1 (MQ=255) cAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGAc > 2:153639/1‑106 (MQ=255) cAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGaa > 3:168827/1‑121 (MQ=255) cAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGaa < 4:168827/121‑1 (MQ=255) ttCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGt > 5:339444/1‑149 (MQ=255) tGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCgg > 8:162435/1‑149 (MQ=255) tGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCgg > 6:165445/1‑149 (MQ=255) ttAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATggg > 2:305663/1‑121 (MQ=255) aaCAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCGGCGCAAGaa > 2:206526/1‑149 (MQ=255) tCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCGGCGCAAGAATCCAg > 5:314226/1‑149 (MQ=255) ccATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCGGCGCAAGAATCCAGCTGttt < 1:206526/149‑1 (MQ=255) tCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCGGCGCAAGAATct > 2:253000/1‑137 (MQ=255) tCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCGGCGCAAGAATct < 1:253000/138‑2 (MQ=255) tCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCGGCGCAAGAATCCAGCTGTTtgtg < 2:293771/149‑1 (MQ=255) ggCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCGGCGCaa < 2:7863/129‑1 (MQ=255) ggCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCGGCGCaa > 1:7863/1‑129 (MQ=255) tCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATg < 1:265497/93‑1 (MQ=255) tCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATg > 2:265497/1‑93 (MQ=255) cTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCGGCGCAAGAATCCAGCTGTTTGTGGGAGCCTCCCATg < 7:162435/149‑1 (MQ=255) tAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCGGCGCAAGAATCCAGCTGTTTGTGGGAGCCTCCCATGTTg < 2:269908/149‑1 (MQ=255) gcgCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGACCCCGCACTTACATGGGGCCAGTCTCCCCCACTGGTCGGCGCAAGAAGCCAGCTGGTAGTCGGAGCCTCCCATGTAGAac > 3:346063/3‑149 (MQ=255) gAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGc > 7:94749/1‑75 (MQ=255) gAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGc < 8:94749/75‑1 (MQ=255) gAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCGGCGCAAGAATCCAGCTGTTTGTGGGAGCCTCCCATGTTGAac > 3:53333/1‑149 (MQ=255) gCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCGGCGCAAGAATCCAGCTGTTTGTGGGAGCCTCCCATGTTGAacac > 1:206488/1‑149 (MQ=255) gCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCGGCGCAAGAATCCAGCTGTTTGTGGGAGCCTCCCATGTTGAac > 7:208354/1‑147 (MQ=255) gCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCGGCGCAAGAATCCAGCTGTTTGTGGGAGCCTCCCATGTTGAac < 8:208354/147‑1 (MQ=255) gTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCGGCGCAAGAATCCAGCTGTTTGTGGGAGCCTCCCATGTTGAACACCCtt > 8:254805/1‑149 (MQ=255) ccGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCGGCGCAAGAATCCAGCTGTTtgt < 6:150935/117‑1 (MQ=255) ccGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCGGCGCAAGAATCCAGCTGTTtgt > 5:150935/1‑117 (MQ=255) ccGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCGGCGCAAGAATCCAGCTGTTTGTGGGAGCCTCCCATGTTGAACACCCTTCTAcc > 8:10445/1‑148 (MQ=255) gTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCGGCGCAAGAATCCAGCTGTTTGTGGGAGCCTCCCATGTTGAACACCCTTCTACCCATCCTGCTGt > 8:289488/1‑149 (MQ=255) tCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCGGCGCAAGAATCCAGCTGTTTGTGGGAGCCTCCCATGTTGAACACCCTTCTACCCATCCTGCTGtt > 7:102913/1‑149 (MQ=255) aGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCGGCGCAAGAATCCAGCTGTTTGTGGGAGCCTCCCATGTTGAACACCCTTCTACCCATCCTGCTGTTc < 6:314226/148‑1 (MQ=255) | TACCGCATCGGCGACTGCGTGGCCCAGCGCAACGTGCATGCGGCGA‑TCTACGACGCCTTGCGCCTGTGCAAGGACTTCTGATCGTTAACAGTCGCCGCCATCGGGCGCGATCCCTGTAGGAGCGGGTTT‑ACCCGCGAATGCGTCAGCACTGACAACACTGTTGCCTGACCGGACGCATTCGCGGGTGAACCCGCTCTTACATGGGGCCAGTCTCGCCCTCTGGTCGGCGCAAGAATCCAGCTGTTTGTGGGAGCCTCCCATGTTGAACACCCTTCTACCCATCCTGCTGTTC > NC_002947/372500‑372791 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |