Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,791,405 | C→G | 8.7% | G283G (GGC→GGG) | PP_3353 → | sulfatase‑modifying protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,791,405 | 0 | C | G | 8.7% | 145.2 / 4.7 | 46 | G283G (GGC→GGG) | PP_3353 | sulfatase‑modifying protein |
Reads supporting (aligned to +/- strand): ref base C (22/20); new base G (2/2); total (24/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.51e-01 |
TACCGGTACATCGCCCGTGGGTTGCTTCCCGGCCAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCACGCCAGCCGCAGCCGGTGTTCATGACGACCTCG > NC_002947/3791264‑3791552 | tACCGGTACATCGCCCGTGGGTTGCTTCCCGGCCAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAggcccggccc > 6:259688/1‑149 (MQ=255) gTACATCGCCCGTGGGTTGCTTCCCGGCCAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGGCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGt < 2:147265/149‑1 (MQ=255) tACATCGCCCGTGGGTTGCTTCCCGGCCAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGGCCGGGCCTGAggg < 6:87677/149‑3 (MQ=255) cccGTGGGTTGCTTCCCGGCCAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCtt < 5:307892/149‑1 (MQ=255) gctTCCCGGCCAACGGCTTTGGCCGGGTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGc < 8:154991‑M2/145‑1 (MQ=255) cccGGCCAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGAc < 5:259688/148‑1 (MQ=255) ggCCAACCGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGCCCAGGCCATGACGAACAGCGCGACGCCAAGCTCGACCCCACAGGCCCCCCCCTGAGTGACTGCTACGACCCGGCAGACCCCg > 4:233788/1‑149 (MQ=255) aaCGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTc < 4:290514/129‑1 (MQ=255) aaCGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTc > 3:290514/1‑129 (MQ=255) aaCGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGt > 7:179724/1‑149 (MQ=255) aaTGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCa > 6:13839/1‑149 (MQ=255) gggAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTgtgt > 2:290545/1‑149 (MQ=255) tGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCa > 6:299777/1‑95 (MQ=255) tGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCa < 5:299777/95‑1 (MQ=255) tGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTcggcg > 3:259752/1‑149 (MQ=255) aCTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTcggcg < 1:290545/147‑1 (MQ=255) tCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGAcc > 7:160779/1‑149 (MQ=255) tCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGAcc > 1:77541/1‑149 (MQ=255) gCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTgtgt > 5:97280/1‑137 (MQ=255) gCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTgtgt < 6:97280/137‑1 (MQ=255) ggCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCAt < 4:259752/149‑1 (MQ=255) tATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATgcg > 2:175929/1‑149 (MQ=255) gccaggccaTGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCaaa < 8:57309/106‑1 (MQ=255) gccaggccaTGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTAcc > 7:139749/1‑149 (MQ=255) aggccaTGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGGGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGcc > 8:247400/1‑149 (MQ=255) caTGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTc > 4:13616/1‑107 (MQ=255) caTGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTc < 3:13616/107‑1 (MQ=255) caTGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCt > 5:200680/1‑148 (MQ=255) caTGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCt < 6:200680/148‑1 (MQ=255) aTGACTCACAGCGCGACGCCAAGCTCGACCCCTGAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCgg < 4:14675/90‑1 (MQ=255) aTGACGCACAGCGCGACGCCAAGCTCGACCCATCAGGCCCCGCCCAGAGTGACAGCTTCGACCAGGCAGACCCCGGCGAGCCCGGGGCgg > 3:14675/1‑90 (MQ=255) aCGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCa < 8:160779/149‑1 (MQ=255) aGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCACGCcag < 2:77541/149‑1 (MQ=255) gACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCACGCcagccg > 1:245303/1‑147 (MQ=255) cAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCACGCCAGCCGCAGCCgg > 4:199438/1‑149 (MQ=255) cAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCACGCCAGCCGCAGCCgg > 2:165211/1‑149 (MQ=255) tCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGc > 4:302208/1‑119 (MQ=255) tCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGc < 3:302208/119‑1 (MQ=255) gACCCCTCAGGCCCGGCGCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCACGCCAGCCGCAGCCGGTGTTc < 8:139749/147‑1 (MQ=255) gACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTcggc < 3:274592/95‑1 (MQ=255) gACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTcggc > 4:274592/1‑95 (MQ=255) gACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCACCGACCCCCACACCCAGCCCGTGTTCAt > 6:25794/1‑149 (MQ=255) tcacTCAGGGCCGGGCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTcggcg < 7:258466/91‑1 (MQ=255) tcacTCAGGGCCGGGCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTcggcg > 8:258466/4‑94 (MQ=255) ccccTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCACGCCAGCCGCAGCCGGTGTTCATga < 3:199438/149‑1 (MQ=255) cccTCAGGCCCGGCCCTGAGTGACTGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCACGCCAGCCGCAGCCGGTGTTCATgac < 3:233788/149‑1 (MQ=255) cTCAGGGCCGGGCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCACGCAAGCCGCAGCCGGTGTTCATgacga > 3:150553/1‑149 (MQ=255) cccggcccTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCACGCCAGCCGCAGCCGGTGTTCATGACGACCTCg > 6:242082/1‑148 (MQ=255) | TACCGGTACATCGCCCGTGGGTTGCTTCCCGGCCAACGGCTTTGGCCTGTTCGATGCCGGCGGCAATGTCTGGGAGCTGACTCGCACGGGCTATCGGCCAGGCCATGACGCACAGCGCGACGCCAAGCTCGACCCCTCAGGCCCGGCCCTGAGTGACAGCTTCGACCCGGCAGACCCCGGCGTGCCGGTGGCGGTAATCAAAGGCGGCTCGCACCTGTGTTCGGCGGACCGCTGCATGCGCTACCGCCCCTCGGCACGCCAGCCGCAGCCGGTGTTCATGACGACCTCG > NC_002947/3791264‑3791552 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |