Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,857,613 A→T 9.3% Q64L (CAG→CTG) 
noncoding (71/224 nt)
PP_3407 →
PP_mr41 →
hypothetical protein
Cobalamin regulatory region

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,857,6130AT 9.3% 149.5 / 5.8 54Q64L (CAG→CTG) 
noncoding (71/224 nt)
PP_3407
PP_mr41
hypothetical protein
Cobalamin regulatory region
Reads supporting (aligned to +/- strand):  ref base A (26/23);  new base T (2/3);  total (28/26)
Fisher's exact test for biased strand distribution p-value = 6.63e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.80e-01

AGGCCTGAGCCTGTCGTACCTGCTGTTCGACAGCCTCGCACGCTGTATGACATTGACGCCAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCAT  >  NC_002947/3857468‑3857761
                                                                                                                                                 |                                                                                                                                                    
aGGCCTGAGCCTGTCGTACCTGCTGTTCGACAGCCTCGCACGCTGTATGACATTGACGCCAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTcag                                                                                                                                                     >  1:44197/1‑147 (MQ=255)
aGGCCGGAGCCTGTCGTACCTGCTGTTCGACAGCGTCGCACGCTGTATGACATTGACGCCAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCTGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTcagc                                                                                                                                                    <  6:35574/148‑1 (MQ=255)
    cTGAGCCTGTCGTACCTGCTGTTCGACAGCCTCGCACGCTGTATGACATTGACGCCAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAggg                                                                                                                                                <  8:321292/148‑1 (MQ=255)
    cTGAGCCTGTCGTACCTGCTGTTCGACAGCCTCGCACGCTGTATGACATTGACGCCAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAggg                                                                                                                                                >  7:321292/1‑148 (MQ=255)
       aGCCTGTCGTACCTGCTGTTCGACAGCCTCGCACGCTGTATGACATTGACGCCAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGcc                                                                                                                                              <  7:21828/147‑1 (MQ=255)
        gCCTGTCGTACCTGCTGTTCGACAGCCTCGCACGCTGTATGACATTGACGCCAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTGCTGAAGGGcctgg                                                                                                                                           <  4:313099/149‑4 (MQ=255)
                 aCCTGCTGTTCGACAGCCTCGCACGCTGTATGACATTGACGCCAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCgg                                                                                                                                  >  8:86888/1‑149 (MQ=255)
                    tgctgTTCGACATCCTCGCACGCTGTATGACATTGACGCCAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGc                                                                                                                                     <  6:96806/143‑1 (MQ=255)
                    tgctgTTCGACAGCCTCGCACGCTGTATGACATTGACGCCAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGc                                                                                                                                     >  5:96806/1‑143 (MQ=255)
                     gctgTTCGACAGCCTCGCACGCTGTATGACATTGACGCCAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGtgct                                                                                                                              >  5:148583/1‑149 (MQ=255)
                       tgTTCGACAGCCTCGCACGCTGTATGACATTGACGCCAAGCCCGCCCCATGCTCTCCTTATGCCTCACGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGa                                                                                                                                           >  5:275866/1‑134 (MQ=255)
                       tgTTCGACAGCCTCGCACGCTGTATGACATTGACGCCAAGCCCGCCCCATGCTCTCCTTATGCCTCACGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGa                                                                                                                                           <  6:275866/134‑1 (MQ=255)
                            gACAGCCTCGCACGCTGTATGACATTGACGCCAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCg                                                                                                                       >  8:111106/1‑149 (MQ=255)
                                gCCTCGCACGCTGTATGACATTGACGCCAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAAc                                                                                                                   <  7:86888/149‑1 (MQ=255)
                                       aCGCTGTATGACATTGACGCCAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGc                                                                                                            >  6:162329/1‑149 (MQ=255)
                                           tGTATGACATTGACGCCAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCCGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGt                                                                                                        >  4:86365/1‑149 (MQ=255)
                                             tATGACATTGACGCCAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGt                                                                                                        <  7:111106/147‑1 (MQ=255)
                                                gACATTGACGCCAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGc                                                                                                   >  6:168207/1‑149 (MQ=255)
                                                 aCATTGACGCCAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCg                                                                                                  >  3:224012/1‑149 (MQ=255)
                                                  cATTGACGCCAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGt                                                                                                 >  6:204862/1‑149 (MQ=255)
                                                          ccAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCACCTCAGGGGGTGAAACAGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCa                                                                                         >  1:275244/1‑149 (MQ=255)
                                                           cAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTGCTGAAGGGcct                                                                                                                                             >  1:215539/1‑95 (MQ=39)
                                                           cAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTGCTGAAGGGcct                                                                                                                                             <  4:294572/96‑2 (MQ=39)
                                                           cAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTGCTGAAGGGcct                                                                                                                                             >  3:294572/1‑95 (MQ=39)
                                                           cAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTGCTGAAGGGcct                                                                                                                                             <  2:215539/96‑2 (MQ=39)
                                                              gcccgcccCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACtgt                                                                                     >  7:239078/1‑149 (MQ=255)
                                                               cccgcccCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACtgtg                                                                                    <  3:260359/149‑1 (MQ=255)
                                                                 cgcccCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGcc                                                                                  <  8:239078/149‑1 (MQ=255)
                                                                      cATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCgta                                                                             <  5:162329/149‑1 (MQ=255)
                                                                               cTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCAt                                                                    <  8:185847/149‑1 (MQ=255)
                                                                                  aTGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGt                                                                                                        >  2:316916/1‑110 (MQ=255)
                                                                                  aTGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGt                                                                                                        <  1:316916/110‑1 (MQ=255)
                                                                                     ccTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAg                                                              >  5:58098/1‑149 (MQ=255)
                                                                                     ccTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAg                                                              <  6:58098/149‑1 (MQ=255)
                                                                                       tCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGa                                                                                                          >  1:242548/1‑103 (MQ=255)
                                                                                       tCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGa                                                                                                          <  2:242548/103‑1 (MQ=255)
                                                                                         gcgTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATg                                                                   <  8:218352/140‑1 (MQ=255)
                                                                                         gcgTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATg                                                                   >  7:218352/1‑140 (MQ=255)
                                                                                          cgTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGAc                                                         <  4:224012/149‑1 (MQ=255)
                                                                                                    ccccTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCGGGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAg                                                <  6:148583/148‑1 (MQ=255)
                                                                                                    ccccTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAg                                                <  2:275244/148‑1 (MQ=255)
                                                                                                      ccTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGt                                                                                                 >  7:241081/1‑97 (MQ=255)
                                                                                                      ccTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGt                                                                                                 <  8:241081/97‑1 (MQ=255)
                                                                                                      ccTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAg                                             <  5:204862/149‑1 (MQ=255)
                                                                                                            ggggTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGc                                       >  8:77833/1‑149 (MQ=255)
                                                                                                                  aaaCGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGc                                                                                                            <  5:53871/74‑1 (MQ=255)
                                                                                                                  aaaCGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGc                                                                                                            >  6:53871/1‑74 (MQ=255)
                                                                                                                    aCGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGTCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTc                               >  5:127044/1‑149 (MQ=255)
                                                                                                                           aCCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGcc                        >  2:67887/1‑149 (MQ=255)
                                                                                                                              ggTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCgta                                                                             >  7:308210/1‑93 (MQ=255)
                                                                                                                              ggTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCgta                                                                             <  8:308210/93‑1 (MQ=255)
                                                                                                                               gTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCg                      >  3:287156/1‑147 (MQ=255)
                                                                                                                                   gTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGAcc                >  7:262553/1‑149 (MQ=255)
                                                                                                                                     cccAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCgg              >  3:143650/1‑149 (MQ=255)
                                                                                                                                         ggCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTg          <  4:143650/149‑1 (MQ=255)
                                                                                                                                             cTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGt      <  2:44197/149‑1 (MQ=255)
                                                                                                                                                cagcagGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTc    <  3:86365/148‑1 (MQ=255)
                                                                                                                                                 agcagGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCa   <  8:262553/148‑1 (MQ=255)
                                                                                                                                                 agcagGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCAt  <  7:77833/149‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                    
AGGCCTGAGCCTGTCGTACCTGCTGTTCGACAGCCTCGCACGCTGTATGACATTGACGCCAAGCCCGCCCCATGCTCTCCTTATGCCTCGCGTTCAGGTGCCCCTCAGGGGGTGAAACGGGAAACCGGTGCGTCCCAGGCCCTTCAGCAGGGCCGGACAATGCCGGTGCTGCCCCCGCAACGGTAAGCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCAT  >  NC_002947/3857468‑3857761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: