Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,915,796 | C→G | 7.9% | Y255* (TAC→TAG) | PP_3455 → | multidrug RND transporter membrane fusion protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,915,796 | 0 | C | G | 7.9% | 156.8 / 2.9 | 50 | Y255* (TAC→TAG) | PP_3455 | multidrug RND transporter membrane fusion protein |
Reads supporting (aligned to +/- strand): ref base C (21/25); new base G (2/2); total (23/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01 |
AGCAGTTGGACCCGATCCATGCCGATGTCACCCAGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGAGCAAGCGGT > NC_002947/3915651‑3915936 | agcagTTGGACCCGATCCATGCCGATGTCACCCAGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCg < 7:19714/149‑1 (MQ=255) ttGGACCCGATCCATGCCGATGTCACCCAGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGcc > 7:334662/1‑149 (MQ=255) ggACCCGATCCATGCCGATGTCACCCAGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGGGTAGGCGCTGCCg < 4:138706/148‑1 (MQ=255) gACCCGATCCATGCCGATGTCACCCAGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCgg < 2:206121/148‑1 (MQ=255) aCCCGATCCATGCCGATGTCACCCAGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCggg < 8:334662/148‑1 (MQ=255) aCCCGATCCATGCCGATGTCACCCAGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGc < 8:24849/149‑1 (MQ=255) ccGATCCATGCCGATGTCACCCAGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGGGTAGGCGCTGCCgtcag > 3:99146/1‑144 (MQ=255) ccGATCCATGCCGATGTCACCCAGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGGGTAGGCGCTGCCgt < 4:99146/145‑2 (MQ=255) cGATCCATGCCGATGTCACCCAGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAg < 3:239179/149‑1 (MQ=255) cGATCCATGCCGATGTCACCCAGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAg > 6:243838/1‑149 (MQ=255) aTGCCGATGTCACCCAGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGctgctg > 6:150281/1‑149 (MQ=255) aTGCCGATGTCACCCAGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGctgctg < 4:319985/149‑1 (MQ=255) ccGATGTCACCCAGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGtt < 1:93119/148‑1 (MQ=255) aGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCa > 6:275649/1‑147 (MQ=255) aGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCa < 5:275649/147‑1 (MQ=255) aGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGc < 5:150281/149‑1 (MQ=255) cccGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGAc < 5:243838/149‑1 (MQ=255) ccGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGAcc > 7:148094/1‑149 (MQ=255) tCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCacc > 6:210103/1‑149 (MQ=255) tCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCa > 8:64697/1‑147 (MQ=255) tCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCa < 7:64697/147‑1 (MQ=255) gCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCaccaac > 7:149325/1‑147 (MQ=255) gccgcgccCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGTCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCAcc < 8:149325/149‑1 (MQ=255) cgcgcaCTGCGCGCCGGAGAATTGAAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCTGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCt > 2:285877/1‑149 (MQ=255) cgcgcCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGTGa < 8:148094/149‑1 (MQ=255) aTTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAAcc > 7:45095/1‑149 (MQ=255) tGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGAc < 5:210103/149‑1 (MQ=255) ggCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACct > 7:191614/1‑149 (MQ=255) cGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCAcc > 4:305826/1‑112 (MQ=255) cGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCAcc < 3:305826/112‑1 (MQ=255) gACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACctgct > 6:326409/1‑149 (MQ=255) cAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAgg > 3:289303/1‑149 (MQ=255) cAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGGTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCCCCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAgg > 6:361725/1‑149 (MQ=255) cgcgCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCTGGCAGcag < 8:45095/149‑3 (MQ=255) cACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGa < 1:205726/126‑1 (MQ=255) cACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGa > 2:205726/1‑126 (MQ=255) cACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGa < 3:27763/126‑1 (MQ=255) cACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGa > 4:27763/1‑126 (MQ=255) cGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCgg < 7:302629/149‑1 (MQ=255) tGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGc < 3:121094/144‑1 (MQ=255) tGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGc > 4:121094/1‑144 (MQ=255) gATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTAc > 1:64802/1‑149 (MQ=255) cAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCt < 2:64802/149‑1 (MQ=255) aGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTg < 2:193582/149‑1 (MQ=255) gATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGa < 4:289303/149‑1 (MQ=255) ccGGCAGCGGGTAGGCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGAGc > 3:346893/2‑147 (MQ=255) cGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGAGCAAg > 4:69951/1‑149 (MQ=255) ggCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCa < 3:160995/82‑1 (MQ=255) ggCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCa > 4:160995/1‑82 (MQ=255) aGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGAGCAAGCGGt < 5:326409/149‑1 (MQ=255) | AGCAGTTGGACCCGATCCATGCCGATGTCACCCAGTCTACCCGCGAGCTCAACGCCCTGCGCCGCGCCCTGCGCGCCGGCGAATTGCAGCAGGTGGGCGACGGCCAGGCACGCGCCACGCTGATCCAGGATGACGGCAGCGCCTACCCGCTGCCGGGCAAGCTGCTGTTCTCCGACATCAGCGTCGACCCCAGCACCAACCAGATCACCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCAGGCAGCTACGTGCGGGTACGCCTGGAGCAAGCGGT > NC_002947/3915651‑3915936 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |