Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,002,684 | C→T | 7.1% | intergenic (+31/‑59) | allE → / → PP_3531 | S‑ureidoglycine aminohydrolase/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,002,684 | 0 | C | T | 7.1% | 168.7 / 2.1 | 56 | intergenic (+31/‑59) | allE/PP_3531 | S‑ureidoglycine aminohydrolase/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (28/24); new base T (2/2); total (30/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01 |
GTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGCACCTCTGCCCTGGCCGCCGATGACTGGCGCCTGGCCTACGACCGC > NC_002947/4002536‑4002826 | gtgGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAAcc > 2:292297/1‑149 (MQ=255) gCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTgg > 1:40801/1‑149 (MQ=255) cgcgcCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCg < 2:40801/147‑1 (MQ=255) cTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCt < 5:154183/147‑1 (MQ=255) cTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTg < 8:254199/148‑1 (MQ=255) cccGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGttt < 1:292297/148‑1 (MQ=255) cccGCAAGCCTGCTAAGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGttt < 8:276200/148‑1 (MQ=255) ccGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGc > 6:110602/1‑149 (MQ=255) cGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGcc > 5:52483/1‑149 (MQ=255) cAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCTCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCcgc < 8:309063/149‑1 (MQ=255) gCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGATGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCa > 1:281081/1‑149 (MQ=255) gCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCa < 5:110602/149‑1 (MQ=255) cTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATAc < 2:299331/147‑1 (MQ=255) cGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGaaa < 6:242978/149‑1 (MQ=255) ggcggcCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATacc < 2:202086/149‑1 (MQ=255) ccAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCt > 7:214702/1‑149 (MQ=255) aGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATaccca < 8:28252/143‑1 (MQ=255) aGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATaccca > 7:28252/1‑143 (MQ=255) aGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTg > 6:221581/1‑149 (MQ=255) gCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCgg < 7:21069/149‑1 (MQ=255) cTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTa > 5:317424/1‑144 (MQ=255) cTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTa < 6:317424/144‑1 (MQ=255) ccTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCa < 5:221581/148‑1 (MQ=255) ctgTACAAGGATGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGaa < 2:281081/148‑1 (MQ=255) tACAAGGACGTGAACCGTCACGTACAACTGACGCTGAACCACAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCAACCCTTCCAGGGAACCGGCCATCAACCGc > 5:65511/1‑149 (MQ=255) aCAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGcc < 2:79885/139‑1 (MQ=255) aCAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGcc > 1:79885/1‑139 (MQ=255) aCAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGct > 6:274643/1‑149 (MQ=255) ggACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGctgcct > 5:237286/1‑149 (MQ=255) ccGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGc > 5:180188/1‑149 (MQ=255) cGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCt > 2:123856/1‑149 (MQ=255) acCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGCCCATGAACCGCTGCCTGCTGCTCGCTGCCTtgctgc > 1:139110/1‑149 (MQ=255) cTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAAc > 2:259337/1‑119 (MQ=255) cTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCg < 4:57445/135‑1 (MQ=255) cTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCg > 3:57445/1‑135 (MQ=255) cTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGctgctg > 4:97249/1‑149 (MQ=255) tGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAGGTTGGCGGGCttgcg < 5:283796/67‑4 (MQ=37) tGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAGGTTGGCGGGCttgcg > 6:283796/1‑64 (MQ=37) aCGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCtgt < 8:214702/147‑1 (MQ=255) gCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGCAc < 5:220933/149‑1 (MQ=255) gCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGCAc > 6:220933/1‑149 (MQ=255) tGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGctgc < 8:107862/118‑1 (MQ=255) tGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGctgc > 7:107862/1‑118 (MQ=255) gAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGCACctc > 1:208722/1‑149 (MQ=255) ccAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGCACCTCTGccc > 7:78402/1‑149 (MQ=255) cAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGCACCTCTGCCCt > 7:56514/1‑149 (MQ=255) cccAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCGTACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGCTCCTCTGCCCTGGccgccgct > 5:23740/1‑146 (MQ=255) ggCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGCACCTCTGCCCTGGCCGCCGATGACTg < 5:274643/149‑1 (MQ=255) gCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGc > 6:258383/1‑122 (MQ=255) gCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGc < 5:258383/122‑1 (MQ=255) gCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGCACCTCTGCCCTGGCCGCCGATGACTGGCGCCTg > 7:206607/1‑149 (MQ=255) cccGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGCACCTCTGCCCTGGCCGCCGATGACTGGCGCCTg < 8:206607/148‑1 (MQ=255) ccGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGCACCTCTGCCCTGGCCGCCGATGACTGGCGCCTGGc > 6:283183/1‑149 (MQ=255) gCCCGCCAGGTTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGCACCTCTGCCCTGGCCGCCGa > 2:79422/1‑128 (MQ=255) gCCCGCCAGGTTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGCACCTCTGCCCTGGCCGCCGa < 1:79422/128‑1 (MQ=255) cccGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGCACCTCTGCCCTGGCCGCCGATGACTGGCGCCTGGCCTACGAc < 3:97249/149‑1 (MQ=255) gCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGCACCTCTGCCCTGGCCGCCGATGACTGGCGCCTGGCCTACGACcgc > 7:279321/1‑149 (MQ=255) | GTGGCTGCGCGCCTTCTGCCCGCAAGCCTGCTACGCCGGCGGCCCAGGCAACTTTAGCTACCTGCTGTACAAGGACGTGAACCGTCACGTACACCTGACGCTGAACCCCAAGCGCTAAGCCCAGGCTGATGCCCGCAAGCCCGCCAACCTGGCGGGCTTTCTGTTTGCCGCGCATACTGAAATACCCACCCTTGCAGGGTACCGGCCATGAACCGCTGCCTGCTGCTCGCTGCCTTGCTGCTGTGCACCTCTGCCCTGGCCGCCGATGACTGGCGCCTGGCCTACGACCGC > NC_002947/4002536‑4002826 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |