Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,013,749 | T→A | 6.6% | I123F (ATC→TTC) | PP_3541 ← | MgtC family transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,013,749 | 0 | T | A | 6.6% | 184.7 / 2.1 | 60 | I123F (ATC→TTC) | PP_3541 | MgtC family transporter |
Reads supporting (aligned to +/- strand): ref base T (29/27); new base A (2/2); total (31/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 |
CTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTG > NC_002947/4013603‑4013890 | cTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATgg < 6:193782/149‑1 (MQ=255) ttCCTGCCCTCTTCCTCCTTCTGCTTCTCCTAATCCTGCCCTTCGACCTTCTCCACAAGCAACGGCATCGTGCCCAGTACCAGAAGGGCCAGTAACGTGCTGATCATCGCCGAGGCTTCGCGCCCCATTCCAGCCGCCGTGCCGATgg > 8:158979/1‑148 (MQ=255) ttCCTGCCCTCTTCCTCCTTATGCTTCTCCTCATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGAGCCGTGGCTTCGCTACCCATGCCAGCCGCCCTGCCGATgg > 8:163471/1‑148 (MQ=255) ttCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATc > 5:15579/1‑148 (MQ=255) cctcctTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATcc < 1:154713/147‑1 (MQ=255) ctcctTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATa < 6:15579/149‑1 (MQ=255) ctcATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGgtcg > 2:142015/1‑149 (MQ=255) cATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGgtcgt > 8:334073/1‑148 (MQ=255) aTCCTGCCCTTCGACCTTCTCCACCAGCATCCGCATCGTGCCCAGTACCAGCAGGGCCAGGACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGgtcgt < 7:163471/147‑1 (MQ=255) aTCCTGCCCTTCGACCTTCTCCAACAGCAACTGCATAGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGAGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCTTCATCCATAGCCCGGCAGCGgtcgt < 7:158979/147‑1 (MQ=255) tGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGcc > 4:40059/1‑149 (MQ=255) tGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGcc > 2:258769/1‑149 (MQ=255) ccTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCtt < 5:137280/149‑1 (MQ=255) cTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCTGTCGTCAGGCCCtt > 8:216321/1‑148 (MQ=255) cTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCtt > 4:62067/1‑148 (MQ=255) cTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGAc < 1:258769/149‑1 (MQ=255) ctcCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTg < 3:40059/148‑1 (MQ=255) tcCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGgt > 1:3046/1‑149 (MQ=255) caccaGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCa < 3:255719/118‑1 (MQ=255) caccaGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCa > 4:255719/1‑118 (MQ=255) caccaGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGgtgt > 1:174866/1‑149 (MQ=255) accaGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGtt < 7:334073/149‑1 (MQ=255) accaGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTCGTGtt > 7:307560/1‑149 (MQ=255) ccaGCAACGGCATCGTGCCCAGTACCAGCACGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTAGTCAGGCCCTTCACATGACTGGTGTTc > 2:64754/1‑149 (MQ=255) gCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTAGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTgg > 7:150421/1‑149 (MQ=255) aaCGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTAGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGcc < 8:150421/149‑1 (MQ=255) gCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTca > 8:233354/1‑126 (MQ=255) gCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTca < 7:233354/126‑1 (MQ=255) cATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCg > 7:125835/1‑109 (MQ=255) cATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCg < 8:125835/109‑1 (MQ=255) cATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTg > 6:186518/1‑141 (MQ=255) cATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTg < 5:186518/141‑1 (MQ=255) cATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTAc < 7:324284/149‑1 (MQ=255) tCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCTGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTAccc < 7:216321/149‑1 (MQ=255) tCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTAccc < 1:64754/149‑1 (MQ=255) tGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCtt > 3:291211/1‑148 (MQ=255) ccAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAg > 2:129972/1‑148 (MQ=255) tACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGACAGCCGCCGTGCCGATGGCAGCCGTAATCCATAGCCCGGCAGCGGTAGTCAGGCCCTTCACATGACAGGTGTTCTCGCCGTTACCCTTCAGAATgg > 6:73269/1‑149 (MQ=255) ccAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCg < 5:74018/95‑1 (MQ=255) ccAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCg > 6:74018/1‑95 (MQ=255) ggCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCAc < 3:62067/149‑1 (MQ=255) ggCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGACAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCAc > 8:43685/1‑149 (MQ=255) gTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCgaga < 1:129972/149‑1 (MQ=255) tGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATc < 8:305818/62‑1 (MQ=255) tGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATc > 7:305818/1‑62 (MQ=255) cTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGAt < 2:3046/149‑1 (MQ=255) ggCTTCGCGCCCCATGCCAGCCGCCGTGCCGAAGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGc > 2:151180/1‑149 (MQ=255) ggCTTCGCGCCCCATGCCAGCCGCCGTGCCGAAGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGc > 2:145853/1‑149 (MQ=255) ttCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCt > 6:323407/1‑149 (MQ=255) ttCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCt > 1:76206/1‑149 (MQ=255) cgcgCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTg < 2:174866/148‑1 (MQ=255) gcgcCCGATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGa < 5:73269/149‑1 (MQ=255) cgccgccGTGCCGATGGCAGCCGTCATGCATAGCCCGGCAGCGGTCTTCATGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGa < 8:307560/148‑1 (MQ=255) gccgccGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCaa < 5:28937/124‑1 (MQ=255) gccgccGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCaa > 6:28937/1‑124 (MQ=255) gccgTGCCGAAGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGc < 1:151180/149‑1 (MQ=255) gccgTGCCGAAGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGc < 1:145853/149‑1 (MQ=255) gTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTg > 4:307855/1‑149 (MQ=255) cGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGa < 4:224799/117‑1 (MQ=255) cGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGa > 3:224799/1‑117 (MQ=255) tGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAAc < 4:156317/112‑1 (MQ=255) tGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAAc > 3:156317/1‑112 (MQ=255) | CTTCCTGCCCTCTTCCTCCTTCTGCTTCTCCTCATCCTGCCCTTCGACCTTCTCCACCAGCAACGGCATCGTGCCCAGTACCAGCAGGGCCAGTACCGTGCTGATCAGCGCCGTGGCTTCGCGCCCCATGCCAGCCGCCGTGCCGATGGCAGCCGTCATCCATAGCCCGGCAGCGGTCGTCAGGCCCTTCACATGACTGGTGTTCTGGCCGTTACCCTTCAGAATGGTACCCGCACCGAGAAAACCGATACCGGCAACGATGCCCTGGATCACCCGACTGAGTGCCTG > NC_002947/4013603‑4013890 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |