Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,049,907 | A→G | 20.2% | intergenic (+40/‑61) | quiA → / → oprB‑III | quinate dehydrogenase/carbohydrate‑selective porin |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,049,907 | 0 | A | G | 20.2% | 68.1 / 14.7 | 42 | intergenic (+40/‑61) | quiA/oprB‑III | quinate dehydrogenase/carbohydrate‑selective porin |
Reads supporting (aligned to +/- strand): ref base A (19/12); new base G (4/4); total (23/19) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.94e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.94e-01 |
CTACGTCTCGCCGAAGACCGGCAAGCAGTACGTGGTGATCACTGCTGGCGGCGCCCGCCAGTCGACTGACCGTGGCGACTATGTGATTTCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAAG‑GCCCCTGTAGGAGCGGGCTTGCCCGCGAATGCCCCTCAAAGACAACCCGAGATTCTGTAATGCCATCCGCAATTCGCATCACCCCCACCCTGCTGCTGGCCCTGGCCAGCACCACTGCCCTTGCCAGCGACGATCTCATGACCCGCA > NC_002947/4049762‑4050055 | cTACGTCTCGCCGAAGACCGGCAAGCAGTACGTGGTGATCACTGCTGGCGGCGCCCGCCAGTCGACTGACCGTGGCGACTATGTGATTTCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAAG‑Gc > 5:71231/1‑149 (MQ=255) tACGTCTCGCCGAAGACCGGCAAGCAGTACGTGGTGATCACTGCTGGCGGCGCCCGCCAGTCGACTGACCGTGGCGACTATGTGATTTCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAAG‑Gcc > 7:14890/1‑149 (MQ=255) gTCTCGCCGAAGACCGGCAAGCAGTACGTGGTGATCACTGCTGGCGGCGCCCGCCAGTCGACTGACCGTGGCGACTATGTGATTTCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAAG‑GCCCCt > 8:173159/1‑149 (MQ=255) gTCTCGCCGAAGACCGGCAAGCAGTACGTGGTGATCACTGCTGGCGGCGCCCGCCAGTCGACTGACCGTGGCGACTATGTGATTTCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAAG‑GCCCCt > 7:267142/1‑149 (MQ=255) tcGCCGAAGACCGGCAAGCAGTACGTGGTGATCACTGCTGGCGGCGCCCGCCAGTCGACTGACCGTGGCGACTATGTGATTTCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAAG‑CCCGCtcc > 7:290270/1‑146 (MQ=255) gCCGAAGACCGGCAAGCAGTACGTGGTGATCACTGCTGGCGGCGCCCGCCAGTCGACTGACCGTGGCGACTATGTGATTTCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAGG‑GGCCTTGTAg < 6:3996/148‑1 (MQ=255) gCCGAAGACCGGCAAGCAGTACGTGGTGATCACTGCTGGCGGCGCCCGCCAGTCGACTGACCGTGGCGACTATGTGATTTCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAGG‑GGCCTTGTAg < 3:287609/148‑1 (MQ=255) gCCGAAGACCGGCAAGCAGTACGTGGTGATCACTGCTGGCGGCGCCCGCCAGTCGACTGACCGTGGCGACTATGTGATTTCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAAG‑GCCCCTGTa < 7:173159/147‑1 (MQ=255) cGAAGACCGGCAAGCAGTACGTGGTGATCACTGCTGGCGGCGCCCGCCAGTCGACTGACCGTGGCGACTATGTGATTTCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCACCTACAAG‑GCCCCTGTAGGAg > 8:68847/1‑149 (MQ=255) gCAGTACGTGGTGATCACTGCTGGCGGCGCCCGCCAGTCGACTGACCGTGGCGACTATGTGATTTCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAAG‑GCCCCTGTAGGAGCGGGCTTGCCcgc < 8:267142/149‑1 (MQ=255) gtgATCACTGCTGGCGGCGCCCGCCAGTCGACTGACCGTGGCGACTATGTGATTTCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAAG‑GCCCCTGTAGGTGCGGGCTTGCCCGCGAATGCCCCt < 8:14890/149‑1 (MQ=255) aTCACTGCTGGCGGCGCCCGCCAGTCGACGGCCCGTGGCGCCTATGTGATTTCGTACGCTCTGCCGTAAACCCGCGTCGCCTGCGTCGC‑GGGCCCGCCCGCGCCGACCAG‑GCCCCGGGAGGCGCGGGCTGGCCCGCGCATGCCCCGCa > 5:269138/1‑148 (MQ=255) ctgctgGCGGCGCCCGCCAGTCGACTGACCGTGGCGACTATGTGATTTCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAGG‑GGCCTTGTAGGAGc > 1:154806/1‑120 (MQ=255) ctgctgGCGGCGCCCGCCAGTCGACTGACCGTGGCGACTATGTGATTTCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAGG‑GGCCTTGTAGGAGc < 2:154806/120‑1 (MQ=255) ctgGCGGCGCCCGCCAGTCGACTGACCGTGGCGACTATGTGATTTCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAAGCGCCCCTGTAGGAGCGGGCTTGCCCGCGAATGCCCCTCAAAGAc < 1:242691/147‑1 (MQ=255) tgGCGGCGCCCGCCAGTCGACTGACCGTGGCGACTATGTGATTTCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGCGGGGGGGGCCCCCCCCAACAAG‑GCCCCGGTGGGGGGGGGGGGGGGCGCGATGGCCCCGCAAAaacaac > 1:345848/1‑149 (MQ=255) atcaccgccAGTCGACTGACCGTGGCGACTATGTGATTTCTTACGCTCTGCCTTAAAACCGCGGCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAAG‑GCCCCTGTAGGAGCGGGCTTGCCCGCGAATGCCCCTCAAAGACAACCCgaga < 7:119180/145‑1 (MQ=255) cccgccAGTCGACTGACCGTGGCGACTATGTGATTTCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAAG‑GCCCCGGTAGGAGCGGGCTTGCCCCCGAATGCCCCTCAAAGACAACCCgacaata > 6:89096/1‑144 (MQ=255) gccAGTCGACTGACCGTGGCGACTATGTGATTTCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCCAGCCCCCGGCGTCAAC‑GCGCCTGGAGGGGCCGGCGTGCCCGCGCCTGGCCCGCCAACACCAGCCGCGATTCTgg > 3:219817/1‑148 (MQ=255) aGTCGCCTGCCCGGGGCGCCTCGGGGATTTCGTACGCGCTGCCGTACACCCGCGGCGCCGGCTTCGC‑GGGCAAGCCCGCTCCTACCCG‑GCCCCGTTCGGCGCGGGCGTGCCCGCGAATGCCCCTCAAAGACAACCCGAGATTCTGTAAt < 6:269138/149‑1 (MQ=255) aGTCGACTGACCGTGGCGACTATGTGATTTCTTACGCTCTGCCGAAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAAG‑GCCCCTGTAGGAGCGGGCTTGCCCGCGAATGCCCCTCAAAGACAACCCGAGATTCTGTAAt < 7:68847/149‑1 (MQ=255) gTCGACTGACCGTGGCGAGTTTGTGTTTTCTTCCGCTGTGCCGTAAAACCGCGGCGCCGGCTTCGG‑GGGCAAGCCCGCTCCTACAAG‑GCCCCTGTTGGAGCGGGCTTGCCCGCGAATGCCCCTCAAAGACAACCCGAGATTCTGTAATg < 8:301851/149‑1 (MQ=38) gTCGACTGACCGTGGCGACTATGTGATTTCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACACG‑GCCCCTGTAGGAGCGGGCTTGCCCGCGAATGCCCCTCAAAGACAACCCGAGATTCTGTAATg < 4:23309/149‑1 (MQ=255) aCTGACCGTGGCGACTATGTGATTTCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAAG‑GCCCCTGTAGGAGCGGGCTTGCCCGCGAATGCCCCTCAAAGACAACCCGAGATTCTGTAATGCCAt < 5:89096/149‑1 (MQ=255) aCCGTGGCGACTATGTGATTTCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAAG‑GCCCCTGTAGGAGCGGGCTTGCCCGCGAATGCCCCTCaaa < 3:319357/119‑1 (MQ=255) aTTTCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAAG‑GCCCCTGTAGGAGCGGGCTTGCCCGCGAATGCCCCTCAAAGACAACCCGAGATTCTGTAATGCCATCCGCAATTCGCATCACCCCCa < 6:71231/149‑1 (MQ=255) tttCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAAG‑GCCCCTGTAGGAGCGGGCTTGCCCGCGAATGCCCCGCAAAGCCCACCCGAGCTTCTGTAATGCCATCCGGCATTCCCATCCCCCCCAc > 5:276566/1‑149 (MQ=37) ttACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCCCTCCAACAAG‑GCCCCAGTAGGAGCGGGCTTGCCCGCGAATGCCCCACAAAGACAACCCCAGATTATGTAATGCCa > 6:330192/1‑122 (MQ=38) cGCTCTGCCGTAAAACCGCGTCGCCTGCTGCGC‑GGGCAAGCCCGCTCCTACAAG‑GCCCCTGTAGGAGCGGGCTTGCCCGCGAATGCCCCTCAAAGACAACCCGAGATTCTGTAATGCCATCCGCAATTCGCATCACCCCCACCctgctg < 4:219817/149‑1 (MQ=255) aCCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAAG‑GCCCCTGTAGGAGCGGGCTTGCCCGCGAATGCCCCTCAAAGACAACCCGAGATTCTGTAATGCCATcc < 2:60365/108‑1 (MQ=255) aCCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAAG‑GCCCCTGTAGGAGCGGGCTTGCCCGCGAATGCCCCTCAAAGACAACCCGAGATTCTGTAATGCCATcc > 1:60365/1‑108 (MQ=255) ccTGCTTCGC‑GGGCAAGCCCGCTCCTACACG‑GCCCCTGTAGGAGCGGGCTTGCCCGCGAATGCCCCTCAAAGACAACCCGAGATTCTGTAATGCCATCCGCAATTCGCATCACCCCCACCCTGCTGCTGGCCCTGGCCa < 3:239061/139‑1 (MQ=255) ttCGC‑GGGCAAGCCCGCTCCTACAAG‑GCCCCTGTAGGAGCGGGCTTGGCCGCGAATGGCGCTCAAAGACAACCCGAGATTCTGTAATGCCATCCGCAATTCGCATCACCCCCACCCTGCTGCTGGCCCTGGCCAGCACCACTGCCCTTg > 5:330472/1‑149 (MQ=255) ccGCTCCTACAAG‑GCCCCTGTAGGAGCGGGCTTGCCCGCGAATGCCCCTCAAAGACAACCCGAGATTCTGTAATGCCATCCGCAATTCGCATCACCCCCACCCTGCTGCTGGCCCTGGCCa > 4:275338/1‑121 (MQ=255) ccGCTCCTACAAG‑GCCCCTGTAGGAGCGGGCTTGCCCGCGAATGCCCCTCAAAGACAACCCGAGATTCTGTAATGCCATCCGCAATTCGCATCACCCCCACCCTGCTGCTGGCCCTGGCCAGCACCACTGCCCTTGCCAGCGACGAtc > 5:356975/1‑148 (MQ=255) cGCTCCTACAAG‑GCCCCTGTAGGAGCGGGCTTGCCCGCGAATGCCCCTCAAAGACAACCCGAGATTCTGTAATGCCATCCGCAATTCGCATCACCCCCACCCTGCTGCTGGCCCTGGCCAGCACCACTGCCCTTGCCAGCGACGAtct > 8:213853/1‑148 (MQ=255) gCTCCTACAGG‑GGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCCCCTCAAAGACAACCCGAGATTCTGTAATGCCATCCGCAATTCGCATCACCCCCACCCTGCTGCTGGCCCTGGCCAGCACCACTGCCCTTGCCAGCGACGATCTCa > 3:183179/1‑149 (MQ=255) cTCCTACAGG‑GGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCCCCTCAAAGACAACCCGAGATTCTGTAATGCCATCCGCAATTCGCATCACCCCCACCCTGCTGCTGGCCCTGGCCAGCACCACTGCCCtt > 7:300569/1‑132 (MQ=255) cTCCTACAGG‑GGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCCCCTCAAAGACAACCCGAGATTCTGTAATGCCATCCGCAATTCGCATCACCCCCACCCTGCTGCTGGCCCTGGCCAGCACCACTGCCCtt < 8:300569/132‑1 (MQ=255) cTCCTACAGG‑GGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCCCCTCAAAGACAACCCGAGATTCTGTAATGCCATCCGCAATTCGCATCACCCCCACCCTGCTGCTGGCCCTGGCCAGCACCACTGCCCtt > 3:206776/1‑132 (MQ=255) aCAAG‑GCCCCTGTAGGAGCGGGCTTGCCCGCGAATGCCCCTCAAAGACAACCCGAGATTCTGTAATGCCATCCGCAATTCGCATCACCCCCACCCTGCTGCTGGCCCTGGCCAGCACCACTGCCCTTGCCAGCGACGATCTCATGAccc > 5:328545/1‑149 (MQ=255) aCAAG‑GCCCCTGTAGGAGCGGGCTTGCCCGCGAATGCCCCTCAAAGACAACCCGAGATTCTGTAATGCCATCCGCAATTCGCATCACCCCCACCCTGCTGCTGGCCCTGGCCAGCACCACTGCCCTTGCCAGCGACGATCTCATGAccc > 3:73504/1‑149 (MQ=255) aG‑GCCCCTGTAGGAGCGGGCTTGCCCGCGAATGCCCCTCAAAGACAACCCGAGATTCTGTAATGCCATCCGCAATTCGCATCACCCCCACCCTGCTGCTGGCCCTGGCCAGCACCACTGCCCTTGCCAGCGACGATCTCATGACCCgca < 6:276566/149‑1 (MQ=255) | CTACGTCTCGCCGAAGACCGGCAAGCAGTACGTGGTGATCACTGCTGGCGGCGCCCGCCAGTCGACTGACCGTGGCGACTATGTGATTTCTTACGCTCTGCCGTAAAACCGCGTCGCCTGCTTCGC‑GGGCAAGCCCGCTCCTACAAG‑GCCCCTGTAGGAGCGGGCTTGCCCGCGAATGCCCCTCAAAGACAACCCGAGATTCTGTAATGCCATCCGCAATTCGCATCACCCCCACCCTGCTGCTGGCCCTGGCCAGCACCACTGCCCTTGCCAGCGACGATCTCATGACCCGCA > NC_002947/4049762‑4050055 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |