Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,091,336 | C→G | 7.8% | intergenic (+22/‑56) | gudP → / → garD | glucarate transporter/galactarate dehydratase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,091,336 | 0 | C | G | 7.8% | 200.6 / 6.9 | 64 | intergenic (+22/‑56) | gudP/garD | glucarate transporter/galactarate dehydratase |
Reads supporting (aligned to +/- strand): ref base C (29/30); new base G (3/2); total (32/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.65e-01 |
CGGTATTCAGCTATCTGGTTATCGTCGGCCCCATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGGTCGTCGTCAACGACGGCGGCTTGG > NC_002947/4091196‑4091482 | cgGTATTCAGCTATCTGGTTATCGTCGGCCCCATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACATGCCCGCGCCGGGTCGCCCGGCa < 7:53367/149‑1 (MQ=255) cAGCTATCTGGTTATCGTCGGCCCCATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCg < 8:186227/148‑1 (MQ=255) aGCTATCTGGTTATCGTCGGCCCCATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCATGCCGGGCGACCCGGCGCGGGCgt < 5:207140/148‑2 (MQ=255) aTCGTCGGCCCCATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGc < 6:359439/148‑1 (MQ=255) tcgtcgGCCCCATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCt < 5:147293/149‑1 (MQ=255) cATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATggg < 4:326832/122‑1 (MQ=255) cATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATggg > 3:326832/1‑122 (MQ=255) gTAACGAATTGCGTGATCCTGCCCCGAAGCCACACGCAGACCCACCCACCGACCGCGAACTGGCCAGCTCCCGGCACTGAAAAAACACGCCCGCGCCGGCACCCACGGCAAGGGCGGATCTACAAAAGCCTGAGACCCTGACAAGTAgg > 4:244611/1‑149 (MQ=255) tATCGAATTGCGTGATGCTGCCCCTAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTTAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCt < 6:243374/130‑1 (MQ=255) tATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCTAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAggg < 3:239474/149‑1 (MQ=255) aTCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGc > 6:345686/1‑149 (MQ=255) gAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAGGCATGAGAACCTGACAAGTAGGGccc > 3:231082/1‑148 (MQ=255) gCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACaa < 5:266645/134‑1 (MQ=255) gCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACaa > 6:266645/1‑134 (MQ=255) cGTGATGCTGCCCCGAAGCCACAAGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGACACTGAAAAAACACGCCCGCGCCGGGTCGCCCCGCATGGGCGGATGTTCAAAAGCCTGAGAACCTGACAAGTAGGGACCTACCATg > 8:61693/1‑149 (MQ=255) ccccGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGt < 2:314280/100‑1 (MQ=255) ccccGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGt > 1:314280/1‑100 (MQ=255) cGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCa < 1:77238/86‑1 (MQ=255) cGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCa > 2:77238/1‑86 (MQ=255) aaGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACAt > 6:59445/1‑149 (MQ=255) aaGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACAt > 6:295498/1‑149 (MQ=255) tccACACGCTGATCCTGCCACCGACGGCGTACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTc < 4:231082/148‑1 (MQ=255) ccACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATc < 3:227479/140‑1 (MQ=255) ccACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATc > 4:227479/1‑140 (MQ=255) ccACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTcc < 5:345686/149‑1 (MQ=255) acacGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGcc < 5:54973/121‑1 (MQ=255) acacGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCg > 4:334049/1‑148 (MQ=255) acacGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTCACAAGTAGGGcc > 6:54973/1‑121 (MQ=255) acGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACt < 5:295498/149‑1 (MQ=255) tGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACaa < 3:329432/107‑1 (MQ=255) tGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACaa > 4:329432/1‑107 (MQ=255) tGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTa > 5:362051/1‑149 (MQ=255) gCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTAc < 2:108858/149‑1 (MQ=255) cGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCg > 7:16463/1‑149 (MQ=255) cGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCt < 8:292763/149‑1 (MQ=255) gAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCac > 5:139983/1‑149 (MQ=255) cAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCAcgacgacga > 5:358849/1‑149 (MQ=255) aGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACgacgacgac < 6:139983/149‑1 (MQ=255) cTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCacgacgac > 6:217588/1‑144 (MQ=255) cTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCacgacgac < 5:217588/144‑1 (MQ=255) tCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAAc > 8:282928/1‑149 (MQ=255) ccGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCa < 5:195996/134‑1 (MQ=255) ccGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCa > 6:195996/1‑134 (MQ=255) ccGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAAcgt > 4:236384/1‑149 (MQ=255) cGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAAcgtc < 7:282928/149‑1 (MQ=255) aCTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTgg < 5:59445/149‑1 (MQ=255) aCTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTg < 8:16463/148‑1 (MQ=255) cTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATc > 5:338590/1‑93 (MQ=255) cTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATc < 6:338590/93‑1 (MQ=255) tGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCacgac < 7:284267/131‑1 (MQ=255) tGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCacgac > 8:284267/1‑131 (MQ=255) aaaaaaCACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAATCATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGgtcgt > 2:283631/1‑149 (MQ=255) aaaaaaCACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAAcgtcg < 1:93917/142‑1 (MQ=255) aaaaaaCACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAAcgtcg > 2:93917/1‑142 (MQ=255) aaCACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGgtcgtcgt > 6:361881/1‑148 (MQ=255) atccGCCCATGCCGGGCGACCCGGCGCGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGgtcgtcgtc > 4:155526/4‑148 (MQ=255) atccGCCCATGCCGGGCGACCCGGCGCGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGgtcgtcgtc > 3:173252/4‑148 (MQ=255) tccGCCCATGCCGGGCGACCCGGCGCGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATg > 7:105124/3‑75 (MQ=18) tccGCCCATGCCGGGCGACCCGGCGCGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATg < 8:105124/73‑1 (MQ=18) acGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGGTCGTCGTCaa < 5:11923/148‑1 (MQ=255) acGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGGTCGTCGTCaa > 6:11923/1‑148 (MQ=255) cccGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGGTCGTCGTCAacgac > 7:9474/1‑149 (MQ=255) ccGCGCCGGGTCGCCCGGGAGGTGGGGTTGTACAAAAGCCTGAGAACCTGCCAAGTAGGTCCCAAACATGGAGTTGATCGAACATTCGGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGGTCGTCGTCAacgacg < 3:244611/149‑1 (MQ=255) gTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACACTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGGTCGTCGTCAACGACGGCGGCTTgg < 6:362051/149‑1 (MQ=255) | CGGTATTCAGCTATCTGGTTATCGTCGGCCCCATCAAGCGTATCGAATTGCGTGATGCTGCCCCGAAGCCACACGCTGAGCCTGCCACCGACGGCGAACTGGCCAGCTCCCGTCACTGAAAAAACACGCCCGCGCCGGGTCGCCCGGCATGGGCGGATGTACAAAAGCCTGAGAACCTGACAAGTAGGGCCCAAACATGCAGTTGATCGAACATTCCGACTCGCCCCGCTACGTCCGCCTGCACGACGACGACAACGTCGTGGTCGTCGTCAACGACGGCGGCTTGG > NC_002947/4091196‑4091482 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |