Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,130,690 | G→A | 6.8% | A97T (GCC→ACC) | PP_3634 → | GNAT family acetyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,130,690 | 0 | G | A | 6.8% | 177.3 / 2.1 | 59 | A97T (GCC→ACC) | PP_3634 | GNAT family acetyltransferase |
Reads supporting (aligned to +/- strand): ref base G (28/27); new base A (2/2); total (30/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.86e-01 |
GGCGTCGGCATGGAAGTCCACCAGTACCTGCAAGCGCTGGACGGCACCCGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCACGCCATGCCTGCGTGGAGCTGAACGCCTTTGCCAACCAGGTGCCGTGGTTCGAGGCGATGG > NC_002947/4130543‑4130834 | ggCGTCGGCATGGAAGTCCACCAGTACCTGCAAGCGCTGGACGGCACCCGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGc < 8:240306/149‑1 (MQ=255) ggCGTCGGCATGGAAGTCCACCAGTACCTGCAAGCGCTGGACGGCACCCGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGc < 3:254335/149‑1 (MQ=255) ggCGTCGGCATGGAAGTCCACCAGTACCTGCAAGCGCTGGACGGCACCCGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGc < 6:347788/149‑1 (MQ=255) ggCATGGAAGTCCACCAGTACCTGCAAGCGCTGGACGGCACCCGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCtgtg > 4:306690/1‑148 (MQ=255) aTGGAAGTCCACCAGTACCTGCAAGCGCTGGACGGCACCCGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGTAtt > 4:107951/1‑149 (MQ=255) tGGAAGTCCACCAGTACCTGCAAGCGCTGGACGGCACCCGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTg < 5:240542/149‑1 (MQ=255) accaGTACCTGCAAGCGCTGGACGGCACCCGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCAtt > 5:295725/1‑139 (MQ=255) accaGTACCTGCAAGCGCTGGACGGCACCCGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCAtt < 6:295725/139‑1 (MQ=255) accaGTACCTGCAAGCGCTGGACGGCACCCGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTg > 2:306985/1‑149 (MQ=255) aCCTGCAAGCGCTGGACGGCACCCGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCgtg > 7:119261/1‑149 (MQ=255) aCCTGCAAGCGCTGGACGGCACCCGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAAGCCTGTGCATTGGCCTTTCTGGCCgtg > 8:76136/1‑149 (MQ=255) gcgcTGGACGGCACCCGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCgccag < 7:181162/149‑1 (MQ=255) tGGACGGCACCCGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCAt > 5:263625/1‑149 (MQ=255) tGGACGGCACCCGCGGTCTGGCTGTGGCGCCTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCAt > 8:283373/1‑149 (MQ=255) cccGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAg < 6:319558/149‑1 (MQ=255) ccGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAgg > 2:283753/1‑149 (MQ=255) ccGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAgg < 6:263625/149‑1 (MQ=255) ccGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAgg < 1:306985/149‑1 (MQ=255) ggTCTGGCTGTGGCGCCTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCAt < 7:283373/149‑1 (MQ=255) tGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGcc > 1:83473/1‑149 (MQ=255) gCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATc > 6:346068/1‑130 (MQ=255) cTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCATTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGt < 1:283753/149‑1 (MQ=255) tgtgGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGcccagc > 2:156790/1‑146 (MQ=255) gtgGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGc > 2:114967/1‑101 (MQ=255) gtgGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGc < 1:114967/101‑1 (MQ=255) tgGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAAGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGcc < 7:76136/149‑1 (MQ=255) gcgcTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCct > 5:292640/1‑149 (MQ=255) gcTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGcccag > 7:237376/1‑146 (MQ=255) cTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCctgct > 5:114066/1‑149 (MQ=255) cTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCcagca < 8:237376/149‑2 (MQ=255) ttACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCctgctg > 3:86414/1‑149 (MQ=255) aCCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTgg < 4:86414/148‑1 (MQ=255) aCCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTgg < 5:281530/148‑1 (MQ=255) ccTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCtgt < 1:119479/82‑1 (MQ=255) ccTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCtgt > 2:119479/1‑82 (MQ=255) gcgcTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGTATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGAc < 3:107951/147‑1 (MQ=255) gcgcTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGAcc < 8:119261/148‑1 (MQ=255) gcTGGATGCCGAAGCACCGGACCAGTCGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTgc > 6:195418/1‑149 (MQ=255) aTGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCa < 2:83473/149‑1 (MQ=255) aTGCCGAAGCACCGGACCAGTTGCTGGGCCTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCa > 8:36597/1‑149 (MQ=255) gTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAgg < 4:104170/95‑1 (MQ=255) gTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAgg > 3:104170/1‑95 (MQ=255) cTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAg > 4:87607/1‑90 (MQ=255) cTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCACGCCATGCCTGCGTGGAGCTGaa < 6:92259/149‑1 (MQ=255) tGGGCTTTGGGCTGTCGCTGCCTGCCCAGGACTTTGGGCTGGCGTGTGAATTGGCGTTTCTGGCGGTGTGCGCCAGCCATCGCCGCCAGGGCTTCGCCGGTGCCCTGGTGGGCGACGTGCGCTCACGCCATGCCTGGGTGGTGCTTAAc < 6:292640/149‑1 (MQ=255) ggCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCACGCCATGCCTGCGTGGAGCTGAACGc > 6:30185/1‑149 (MQ=255) cTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCACGCCATGCCTGCGTGGAGCTGa > 7:134448/1‑143 (MQ=255) cTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCACGCCATGCCTGCGTGGAGCTGa < 8:134448/143‑1 (MQ=255) gcTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTggg > 3:321037/1‑102 (MQ=255) gcTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTggg < 4:321037/102‑1 (MQ=255) cTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCACGCCATGCCTGCGTGGAGCTGAACGCCTTTGCCAACCAGGt > 2:314912/1‑149 (MQ=255) ccAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCACGCCATGCCTGCGTGGAGCTGAACGCCTTTGCCAACCAGGTGcc < 6:114066/149‑1 (MQ=255) cAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCACGCCATGCCTGCGTGGAGCTGAACGCCTTTGCCAACCAGGTGCCg < 1:314912/149‑1 (MQ=255) cAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCACGCCATGCCTGCGTGGAGCTGAACGCCTTTGCCAACCAGGTGCCGTGGtt > 2:43706/1‑149 (MQ=255) gATGGGCAGACCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCACGCCATGCCTGCGTGGAGCTGAACGCCTTTGCCAACCAGGTGCCGTg < 3:191358/140‑1 (MQ=255) gATGGGCAGACCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCACGCCATGCCTGCGTGGAGCTGAACGCCTTTGCCAACCAGGTGCCGTg < 3:90826/140‑1 (MQ=255) gATGGGCAGACCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCACGCCATGCCTGCGTGGAGCTGAACGCCTTTGCCAACCAGGTGCCGTg > 4:191358/1‑140 (MQ=255) gATGGGCAGACCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCACGCCATGCCTGCGTGGAGCTGAACGCCTTTGCCAACCAGGTGCCGTg > 4:90826/1‑140 (MQ=255) gCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCACGCCATGCCTGCGTGGAGCTGAACGCCTTTGCCAACCAGGTGCCGTGGTTCGAGGCGATgg > 8:178663/1‑149 (MQ=255) | GGCGTCGGCATGGAAGTCCACCAGTACCTGCAAGCGCTGGACGGCACCCGCGGTCTGGCTGTGGCGCTTACCCTGGCGCTGGATGCCGAAGCACCGGACCAGTTGCTGGGCTTTGCGCTGTCGCTGCCAGCCCAGGACGATGGGCAGGCCTGTGCATTGGCCTTTCTGGCCGTGTGCGCCAGCCATCGCCGCCAGGGCATCGCCCGTGCCCTGCTGGGCGACCTGCGCTCACGCCATGCCTGCGTGGAGCTGAACGCCTTTGCCAACCAGGTGCCGTGGTTCGAGGCGATGG > NC_002947/4130543‑4130834 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |