Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,356,303 | A→G | 9.1% | Q274R (CAG→CGG) | modC → | molybdate ABC transporter ATP‑binding protein ModC |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,356,303 | 0 | A | G | 9.1% | 116.7 / 2.9 | 44 | Q274R (CAG→CGG) | modC | molybdate ABC transporter ATP‑binding protein ModC |
Reads supporting (aligned to +/- strand): ref base A (20/20); new base G (2/2); total (22/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.60e-01 |
GCTCGCCTTGACCTGTCGCTGGCCCAGGGCGACGACGCCGGCGTCGTGTTCGAAGGTAGGGTGGTTGGGCACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACTGGCGGCGGATAGCGCATCGAGCATCCTCAACCGCCTGCCGGTGCGTGTGCGCGAGAGCTGCCCGGCGGCCAACCCGGCGCAT > NC_002947/4356155‑4356442 | gCTCGCCTTGACCTGTCGCTGGCCCAGGGCGACGACGCCGGCGTCGTGTTCGAAGGTAGGGTGGTTGGGCACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCa < 4:39775/149‑1 (MQ=255) cTCGCCTTGACCTGTCGCTGGCCCAGGGCGACGACGCCGGCGTCGTGTTCGAAGGTAGGGTGGTTGGGCACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAg > 1:14439/1‑149 (MQ=255) cTCGCCTTGACCTGTCGCTGGCCCAGGGCGACGACGCCGGCGTCGTGTTCGAAGGTAGGGTGGTTGGGCACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAg < 1:272609/149‑1 (MQ=255) tCGCCTTGACCTGTCGCTGGCCCAGGGCGACGACGCCGGCGTCGTGTTCGAAGGTAGGGTGGTTGGGCACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAgg > 3:147551/1‑149 (MQ=255) cGCCTTGACCTGTCGCTGGCCCAGGGCGACGACGCCGGCGTCGTGTTCGAAGGTAGGGTGGTTGGGCACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGt < 1:14677/149‑1 (MQ=255) cTGTCGCTGGCCCAGGGCGACGACGCCGGCGTCGTGTTCGAAGGTAGGGTGGTTGGGCACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATg < 6:66449/144‑1 (MQ=255) cTGTCGCTGGCCCAGGGCGACGACGCCGGCGTCGTGTTCGAAGGTAGGGTGGTTGGGCACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATg > 5:66449/1‑144 (MQ=255) gCTGGCCCAGGGCGACGACGCCGGCGTCGTGTTCGAAGGTAGGGTGGTTGGGCACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCAccc > 2:193047/1‑149 (MQ=255) ccAGGGCGACGCCGCCGGCGTCGTGTTAGAAGGTAGGGTGGTTGGGCACGCCCCGCATTAAGGCCTGCTGGACCTGCGCCTGCCCGGCAGCACCGGGCCGCGGCTGCGCATCACCCACGCGGCGCAGGTGATGGGCCGCACCCAGcgcg > 8:113701/1‑149 (MQ=255) ccAGGGCGACGACGCCGGCGTCGTGTTCGAAGGTAGGGTGGTTGGGCACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGcgcg > 7:125161/1‑149 (MQ=255) ccAGGGCGACGACGCCGGCGTCGTGTTCGAAGGTAGGGTGGTTGGGCACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCCCATCACCTGCGCCGCGTGGGTGATGCgcag < 4:265798/138‑1 (MQ=38) ccAGGGCGACGACGCCGGCGTCGTGTTCGAAGGTAGGGTGGTTGGGCACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCCCATCACCTGCGCCGCGTGGGTGATGCgcag > 3:265798/1‑138 (MQ=38) gacgCCGGCGTCGTGTTCGAAGGTAGGGGGGTTGGGCACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCa < 4:35929/149‑1 (MQ=255) cgCCGGCGTCGTGTTCGAAGGTAGGGTGGTTGGGCACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGgc > 4:236234/1‑124 (MQ=255) cgCCGGCGTCGTGTTCGAAGGTAGGGTGGTTGGGCACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGgc < 3:236234/124‑1 (MQ=255) gCCGGCGTCGTGTTCGAAGGTAGGGTGGTTGGGCACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGc > 3:244640/1‑149 (MQ=255) cGGCGTCGTGTTCGAAGGTAGGGTGGTTGGGCACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGccc > 8:269514/1‑149 (MQ=255) ggCGTCGTGTTCGAAGGTAGGGTGGTTGGGCACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCg < 4:244640/149‑1 (MQ=255) gtgtTCGAAGGTAGGGTGGTTGGGCACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCTGCGCCGCGTGGGTGATGCgcagca < 1:334015/118‑1 (MQ=38) gtgtTCGAAGGTAGGGTGGTTGGGCACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCTGCGCCGCGTGGGTGATGCgcagca > 2:334015/1‑118 (MQ=38) aaGGTAGGGTGGTTGGGCACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTg > 5:79690/1‑149 (MQ=255) aGGTAGGGTGGTTGGGCACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTgg < 4:147551/149‑1 (MQ=255) cACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACTGGCGGCGGATAg > 6:8122/1‑149 (MQ=255) ccGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACt < 1:259164/131‑1 (MQ=255) ccGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACt > 2:259164/1‑131 (MQ=255) gCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACTGGCGGCGGATAGCGCATCGa < 5:8122/149‑1 (MQ=255) aTTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACTGGCGGCGGATAGCGCATCGAGc < 7:269514/149‑1 (MQ=255) cGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACTGGCGGCGGATAGCGCATCGAGCATc < 3:56589/148‑1 (MQ=255) ctgGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACTGGCGGCGGATAGCGCATCGAGCATCCTCAAcc < 5:100636/148‑1 (MQ=255) ccTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACTGGCGGCGGATAGCGCATCGAGCATCCTCAACCGCCTGCCGGTGc < 7:113701/149‑1 (MQ=255) ccTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACTGGCGGCGGATAGCGCATCGAGCATCCTCAACCGCCTGCCGGTGc < 6:79690/149‑1 (MQ=255) gCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACTGGCGGCGGATAGCGCATCGAGCATCCTCAACCGCCTGCCGGTGCgtg > 8:213805/1‑149 (MQ=255) ccGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACTGGCGGCGGATGGCGCATCGAGCATCCTCAACCGCCTGCCGGTGCGtgtg > 1:47389/1‑149 (MQ=255) gcagcaGCGGGCCGCTGCTGCGCATCAGCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACTGGCGGCGGATATCGCATCGAGCATCCTCAACCGCCTGCCGGTGCGTGTgcgc < 8:125161/149‑1 (MQ=255) gcagcaGCGGCCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACTGGCGGCGGATAGCGCATCGAGTATCCTCAACCGCCTGCCGGTGCGTGTgcgc > 7:254366/1‑149 (MQ=255) gctgctGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACTGGCGGCGGATAGCGCATCGAGCATCCTCaa > 3:261512/1‑114 (MQ=255) gctgctGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACTGGCGGCGGATAGCGCATCGAGCATCCTCaa < 4:261512/114‑1 (MQ=255) cgcATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACTGGCGGCGGATGGCGCATCGAGCATCCTCAACCGCCTGCCGGTGCGTGTGCGCGAGAGCTGCCCGGCGGcc < 2:47389/147‑1 (MQ=255) aCCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACTGGCGGCGGATAGCGCATCGAGCATCCTCAACCGCCTGCCGGTGCGTGTGCGCGAGAGCTGCCCGGCGGCCAACCCGgc > 1:59641/1‑149 (MQ=255) cccACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACTGGCGGCGGATAGCGCATCGAGCATCCTCAACCGCCTGCCGGTGCGTGTGCGCGAGAGCTGCCAGGCGGCCAACCCGgcg > 5:156504/1‑149 (MQ=255) ccACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACTGGCGGCGGATAGCGCATCGa > 2:74189/1‑89 (MQ=255) ccACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACTGGCGGCGGATAGCGCATCGa < 1:74189/89‑1 (MQ=255) ccACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACTGGCGGCGGATAGCGCATCGAGCATCCTCAACCGCCTGCCGGTGCGTGTGCGCGAGAGCTGCCCGGCGGCCAACCCGgcg > 3:257744/1‑148 (MQ=255) aCGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACTGGCGGCGGATAGCGCATCGAGTATCCTCAACCGCCTGCCGGTGCGTGTGCGCGAGAGCTGCCCGGCGGCCAACCCGGCGCAt < 8:254366/149‑1 (MQ=255) aCGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACTGGCGGCGGATAGCGCATCGAGCATCCTCAACCGCCTGCCGGTGCGTGTGCGCGAGAGCTGCCCGGCGGCCAACCCGGCGCAt < 4:257744/149‑1 (MQ=255) | GCTCGCCTTGACCTGTCGCTGGCCCAGGGCGACGACGCCGGCGTCGTGTTCGAAGGTAGGGTGGTTGGGCACGACCCGCATTACGGCCTGCTGGACCTGCGCCTGCCCGGCAGCAGCGGGCCGCTGCTGCGCATCACCCACGCGGCGCAGGTGATGGGCAGCACCCTGCGCGTCAAGGTGCAGGCCCGGGATGTCAGCCTGGCACTGGCGGCGGATAGCGCATCGAGCATCCTCAACCGCCTGCCGGTGCGTGTGCGCGAGAGCTGCCCGGCGGCCAACCCGGCGCAT > NC_002947/4356155‑4356442 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |