| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,356,602 | G→A | 10.8% | intergenic (+28/‑30) | modC → / → PP_3831 | molybdate ABC transporter ATP‑binding protein ModC/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,356,602 | 0 | G | A | 10.8% | 95.7 / 2.6 | 37 | intergenic (+28/‑30) | modC/PP_3831 | molybdate ABC transporter ATP‑binding protein ModC/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (20/13); new base A (2/2); total (22/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.00e-01 | |||||||||||
CTGGATGCTGGCGGCAATGCCCTGCTTGCACGCATCACCCGCTTCTCGGCAGACCAGCTCGGCTTGCACACAGGGCAGATACTGTTCGCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCAGTGACCTGATCGAGGCCCGCCGCCCATGCTTGACTGCCCCCTGCCGCGCACCCTGCACTACGTTGACGACAGTCAGCCGGGCCTGACCCGTCGGCGCTGGCGCGACCGTTTCATCTACCTGGATGCCGATGGCCAACGGG > NC_002947/4356455‑4356746 | cTGGATGCTGGCGGCAATGCCCTGCTTGCACGCATCACCCGCTTCTCGGCAGACCAGCTCGGCTTGCACACAGGGCAGATACTGTTCGCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGa > 8:61829/1‑149 (MQ=255) gATGCTGGCGGCAATGCCCTGCTTGCACGCATCACCCGCTTCTCGGCAGACCAGCTCGGCTTGCACACAGGGCAGATACTGTTCGCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGAt > 1:54103/1‑147 (MQ=255) gATGCTGGCGGCAATGCCCTGCTTGCACGCATCACCCGCTTCTCGGCAGACCAGCTCGGCTTGCACACAGGGCAGATACTGTTCGCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCa > 7:26085/1‑149 (MQ=255) cggcAATGCCCTGCTTGCACGCATCACCCGCTTCTCGGCAGACCAGCTCGGCTTGCACACAGGGCAGATACTGTTCGCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCAGTGACCTg < 6:80465/149‑1 (MQ=255) aaTGCCCTGCTTGCACGCATCACCCGCTTCTCGGCAGACCAGCTCGGCTTGCACACAGGGCAGATACTGTTCGCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCAGTGACCTGATc > 2:114029/1‑148 (MQ=255) aaTGCCATGCTTGCACGCATAACCCGCTTCTCGGCAGACCAGCTCGGCTTGCACACAGGGCAGATACTGTTCGCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCAGTGACCTGATc > 6:236263/1‑148 (MQ=255) ctcGGCAGACCAGCTCGGCTTGCACACAGGGCAGATACTGTTCGCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCAGTGACCTGATCGAGGCCCGCCGCCCATGCTTGACTGcccc < 8:255357/148‑1 (MQ=255) gCAGACCAGCTCGGCTTGCACACAGGGCAGATACTGTTCGCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCAGTGACCTGATCGAGGCCCGCCGCCCATg > 6:320565/1‑132 (MQ=255) gCAGACCAGCTCGGCTTGCACACAGGGCAGATACTGTTCGCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCAGTGACCTGATCGAGGCCCGCCGCCCATg < 5:320565/132‑1 (MQ=255) cAGCTCGGCTTGCACACAGGGCAGATACTGTTCGCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCAGTGACCTGATCGAGGCCCGCCGCCCa < 8:73115/124‑1 (MQ=255) cAGCTCGGCTTGCACACAGGGCAGATACTGTTCGCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCAGTGACCTGATCGAGGCCCGCCGCCCa > 7:73115/1‑124 (MQ=255) cAGCTCGGCTTGCACACAGGGCAGATACTGTTCGCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTAATCAGTGACCTGATCGAGGCccgc > 7:321187/1‑118 (MQ=255) cAGCTCGGCTTGCACACAGGGCAGATACTGTTCGCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTAATCAGTGACCTGATCGAGGCccgc < 2:64157/118‑1 (MQ=255) cAGCTCGGCTTGCACACAGGGCAGATACTGTTCGCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTAATCAGTGACCTGATCGAGGCccgc < 8:321187/118‑1 (MQ=255) cAGCTCGGCTTGCACACAGGGCAGATACTGTTCGCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTAATCAGTGACCTGATCGAGGCccgc > 1:64157/1‑118 (MQ=255) ggCTTGCACACAGGGCAGATACTGTTCGCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCAGTGACCTGATCGAGGCCCGCCGCCCATGCTTGACTGCCCCCTGCCGCGCACCCTg < 6:59647/147‑1 (MQ=255) ggCTTGCACACAGGGCAGATACTGTTCGCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCAGTGACCTGATCGAGGCCCGCCGCCCATGCTTGACTGCCCCCTGCCGCGCACCCTGCa > 2:1362/1‑149 (MQ=255) ggCAGATACTGTTCGCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCAGTGACCTGATCGAGGCCCGCCGCCCATGCTTGACTGCCCCCTGCCGCGCACCCTGCACTACGTTgacga > 4:174014/1‑148 (MQ=255) gCAGATACTGTTCGCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCAGTGACCTGATCGAGGCCCGCCGCCCATGCTTGACTGCCCCCTGCCGCGCACCCTGCACTACGTTgacga > 8:252817/1‑147 (MQ=255) aCTGTTCGCCCAGATCAAGTCGGTGGCCC‑TTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCa > 5:45411/1‑71 (MQ=255) aCTGTTCGCCCAGATCAAGTCGGTGGCCC‑TTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCa < 6:45411/71‑1 (MQ=255) cGCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCAGTGACCTGATCGAGGCCCGCCGCCCATGCTTGACTGCCCCCTGCCGCGCACCCTGCACTACGTTGACGACAGTCAGCCGGGc < 1:324398/148‑1 (MQ=255) cGCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCAGTGACCTGATCGAGGCCCGCCGCCCATGCTTGACTGCCCCCTGCCGCGCACCCTGCACTACGTTGACGACAGTCAGCCGGGc > 2:324398/1‑148 (MQ=255) gCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCAGTGACCTGATCGAGGCCCGCCGCCCATGCTTGACTGCCCCCTGCCGCGCACCCTGCACTACGTTGACGACAGTCAGCCGGGCCt < 2:59641/149‑1 (MQ=255) ccAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCAGTGACCTGATCGAGGCCCGCCGCCCATGCTTGACTGCCCCCTGCCGCGCACCCTGCACTACGTTGACGACAGTCAGCCGGGCCTGa < 1:1362/149‑1 (MQ=255) cAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCAGTGACCTGATCGAGGCCCGCCGCCCATGCTTGACTGCCCCCTGCCGCGCACCCTGCACTACGTTGACGACAGTCAGCCGGGCCTGAc < 3:174014/149‑1 (MQ=255) tCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCAGTGACCTGATCGAGGCCCGCCGCCCATGCTTGACTGCCCCCTGCCGCGCACCCTGCACTACGTTGACGACAGTCAGCCGGGCCTGACCCGt > 4:138476/1‑149 (MQ=255) cAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCAGTGACCTGATCGAGGCCCGCCGCCCATGCTTGACTGCCCCCTGCCGCGCACCCTGCACTACGTTGACGACAGTCAGCCGGGCCTGACCCGTc > 8:114744/1‑149 (MQ=255) cccTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCAGTGACCTGATCGAGGCCCGCCGCCCATGCTTGACTGCCCCCTGCCGCGCACCCTGCACTACGTTGACGACAGTCAGCCGGGCCTGACCCGTCGGCGCTGgcgc < 7:252817/149‑1 (MQ=255) ccTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCAGTGACCTGATCGAGGCCCGCCGCCCATGCTTGACTGCCCCCTGCCGCGCACCCTGCACTACGTTGACGACAGTCAGCCGGGCCTGACCCGTCGGCGCTGgcgc > 8:56088/1‑148 (MQ=255) cgcgTATTGTCCATTGATCAGTGACCTGATCGAGGCCCGCCGCCCATGCTTGACTGCCCCCTGCCGCGCACCCTGCACTACGTTGACGACAGTCAGCCGGGCCTGACCCGTCGGCGCTGGCGCGACCGTTTCATCTACCTGGATGCCGa > 4:17369/1‑149 (MQ=255) cgTATTGTCCATTGATCAGTGACCTGATCGAGGCCCGCCGCCCATGCTTGACTGCCCCCTGCCGCGCACCCTGCACTACGTTGACGACAGTCAGCCGGGCCTGACCCGTCGGCGCTGGCGCGACCGTTTCATCTACCTGGATGCCGATg < 3:17369/149‑1 (MQ=255) tCCATTGATCAGTGACCTGATCGAGGCCCGCCGCCCATGCTTGACTGCCCCCTGCCGCGCACCCTGCACTACGTTGACGACAGTCAGCCGGGCCTGACCCGTCGGCGCTGGCGCGACCGTTTCATCTACCTGGATGCCGATGGCCAACg > 3:39272/1‑149 (MQ=255) tCCATTGATAACTGACCTGATCGAGCCCCGCAGCCCATGCTTGACTGCCCCCTGACCCGCACCCAGCACTACGTTCACCACAGTCCGCCGGGCCAGACCCGTCGGCGCTGGCGCGCCCGTTTCATCTACCTGGCTGCCGCAGGCCAACg > 6:267649/1‑149 (MQ=255) aTTGATCAGTGACCTGATCGAGGCCCGCCGCCCATGCTTGACTGCCCCCTGCCGCGCACCCTGCACTACGTTGACGACAGTCAGCCGGGCCTGACCCGTCGGCGCTGGCGCGACCGTTTCATCTACCTGGATGCCGATGGCCAACggg > 8:245005/1‑148 (MQ=255) aTTGATCAGTGACCTGATCGAGGCCCGCCGCCCATGCTTGACTGCCCCCTGCCGCGCACCCTGCACTACGTTGACGACAGTCAGCCAGGc < 7:50783/90‑1 (MQ=255) aTTGATCAGTGACCTGATCGAGGCCCGCCGCCCATGCTTGACTGCCCCCTGCCGCGCACCCTGCACTACGTTGACGACAGTCAGCCAGGc > 8:50783/1‑90 (MQ=255) | CTGGATGCTGGCGGCAATGCCCTGCTTGCACGCATCACCCGCTTCTCGGCAGACCAGCTCGGCTTGCACACAGGGCAGATACTGTTCGCCCAGATCAAGTCGGTGGCCCTTTTGGGTTGAGCATCCTCAGCGCGCGTATTGTCCATTGATCAGTGACCTGATCGAGGCCCGCCGCCCATGCTTGACTGCCCCCTGCCGCGCACCCTGCACTACGTTGACGACAGTCAGCCGGGCCTGACCCGTCGGCGCTGGCGCGACCGTTTCATCTACCTGGATGCCGATGGCCAACGGG > NC_002947/4356455‑4356746 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |