Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,521,320 | G→A | 6.9% | P140S (CCA→TCA) | icd ← | NADP(+)‑specific isocitrate dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,521,320 | 0 | G | A | 6.9% | 171.5 / 2.0 | 58 | P140S (CCA→TCA) | icd | NADP(+)‑specific isocitrate dehydrogenase |
Reads supporting (aligned to +/- strand): ref base G (28/26); new base A (2/2); total (30/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.82e-01 |
GGTGACCCCCATTTCCTCCTTGAGAAACTTGATCACCTTGTTCGCCTCGGGCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCACGTTGAGGGAGCGGATGCCGCCACCGACGGGCGTGGTCAGCGGGCCCTTGATCGATACCACATAATCACGCA > NC_002947/4521174‑4521457 | ggTGACCCCCATTTCCTCCTTGAGAAACTTGATCACCTTGTTCGCCTCGGGCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTgg < 6:159669/147‑1 (MQ=255) ccccAATTCCTACTTGAGAAACTTGATCACCTTGTTCGCCTCGGGCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGACCGGCTTTTTCACCGGGCTTGGCaaaca > 6:19973/1‑146 (MQ=255) ccATTTCCTCCTTGAGAAACTTGATCACCTTGTTCGCCTCGGGCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTg > 1:341423/1‑148 (MQ=255) ctcctTGAGAAACTTGATCACCTTGTTCGCCTCGGGCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACcaca < 5:19973/149‑1 (MQ=255) tcctTGAGAAACTTGATCACCTTGTTCGCCTCGGGCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACAccc < 1:95119/138‑1 (MQ=255) tcctTGAGAAACTTGATCACCTTGTTCGCCTCGGGCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACAccc > 2:95119/1‑138 (MQ=255) tcctTGAGAAACTTGATCACCTTGTTCGCCTCGGGCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAg > 5:352358/1‑149 (MQ=255) tcctTGAGAAACTTGATCACCTTGTTCGCCTCGGGCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAg > 3:220728/1‑149 (MQ=255) ctTGAGAAACTTGATCACCTTGTTCGCCTCGGGCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCa > 3:146909/1‑149 (MQ=255) gagaAACTTGATCACCTTGTTCGCCTCGGGCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCg > 4:175637/1‑149 (MQ=255) gaAACTTGATCACCTTGTTCGCCTCGGGCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTgg > 4:71828/1‑124 (MQ=255) gaAACTTGATCACCTTGTTCGCCTCGGGCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTgg < 3:71828/124‑1 (MQ=255) gaAACTTGATCACCTTGTTCGCCTCGGGCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGc < 4:146909/149‑1 (MQ=255) aaCTTGATCACCTTGTTCGCCTCGGGCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCg < 7:315888/149‑1 (MQ=255) aCTTGATCACCTTGTTCGCCTCGGGCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCg > 3:76846/1‑148 (MQ=255) gCCTCGGGCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTc > 7:271750/1‑149 (MQ=255) gCCTCGGGCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTc < 8:271750/149‑1 (MQ=255) ccTCGGGCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTc > 7:76344/1‑148 (MQ=255) ccTCGGGCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGACACACCCTGGAACCACAGCCCCGGCCGCAGGCATACATACAggga > 3:272707/1‑146 (MQ=255) ccTCGGGCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGACACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTc > 3:277416/1‑148 (MQ=255) cTCGGGCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCa < 2:341423/149‑1 (MQ=255) gggCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGtt > 1:165641/1‑149 (MQ=255) gggCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGtt > 3:265060/1‑149 (MQ=255) gggCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGATTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGtt < 5:298560/149‑1 (MQ=255) aCCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTgg < 4:265060/149‑1 (MQ=255) cccGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGc < 6:341678/125‑1 (MQ=255) cccGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGc > 5:341678/1‑125 (MQ=255) ccGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCCCCGGCCGCAGGCATACATACAGGTCCAGTTGCTGgcg > 2:258351/1‑149 (MQ=255) ccGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGgcg > 2:191627/1‑149 (MQ=255) ccTTCCAGTCGATGTCGGCATAGATGTCTTCGGAGTTCTCGCGGTAGATCACCATGTCTACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACGACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAgg < 4:220728/149‑1 (MQ=255) ccTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAgg < 1:258351/149‑1 (MQ=255) ttCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGc > 5:72903/1‑149 (MQ=255) cTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCACGt < 6:352358/149‑1 (MQ=255) gATGCCGTCATAGCTGTCTTCTGAGGTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGACACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCACGTTGa < 4:272707/149‑1 (MQ=255) gATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCACGTTGa < 3:175637/149‑1 (MQ=255) gATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGACACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCACGTTGa < 4:277416/149‑1 (MQ=255) gCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCACGTTGAgg < 8:76344/148‑1 (MQ=255) cGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCACGTTGAgg > 2:129474/1‑146 (MQ=255) cGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCACGTTGAGGAAg < 1:129474/149‑1 (MQ=255) tCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGcata < 8:214444/97‑1 (MQ=255) tCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGcata > 7:214444/1‑97 (MQ=255) ttCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAgg > 1:220453/1‑103 (MQ=255) ttCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAgg < 2:220453/103‑1 (MQ=255) ttCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCACGTTGa < 5:15684/131‑1 (MQ=255) ttCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCACGTTGa > 6:15684/1‑131 (MQ=255) ttCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCACGTTGAGGGAGCGGATGCCGCCAc > 8:247075/1‑149 (MQ=255) ttCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCACGTTGAGGGAGCGGATGCCGCCAc > 8:121723/1‑149 (MQ=255) cGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAg < 8:123899/88‑1 (MQ=255) cGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAg > 7:123899/1‑88 (MQ=255) cgcgGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCACGTTGAGGGAGCGGATGCCGCCACCGACGGGCGTg < 7:121723/149‑1 (MQ=255) gcgGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCa > 4:261427/1‑113 (MQ=255) gcgGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCa < 3:261427/113‑1 (MQ=255) gcgGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCACGTTGAGGGAGCGGATGCCGCCACCGACGGGCGt < 4:76846/147‑1 (MQ=255) cgGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCACGTTGAGGGAGCGGATGCCGCCACCGACGGGCGTGGt < 1:191627/149‑1 (MQ=255) gATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCACGTTGAgg < 3:187767/115‑1 (MQ=255) gATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCACGTTGAgg > 4:187767/1‑115 (MQ=255) cATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCACGTTGAGGGAGCGGATGCCGCCACCGACGGGCGTGGTCAGCGGGCCCt > 3:236345/1‑149 (MQ=255) tCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCACGTTGAGGGAGCGGATGCCGCCACCGACGGGCGTGGTCAGCGGGCCCTTGa < 7:247075/148‑1 (MQ=255) cGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCACGTTGAGGGAGCGGATGCCGCCACCGACGGGCGTGGTCAGCGGGCCCTTGATc > 4:253065/1‑149 (MQ=255) cGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCACGTTGAGGGAGCGGATGCCGCCACCGACGGGCGTGGTCAGCGGGCCCTTGATCGAt < 4:236345/149‑1 (MQ=255) cACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCACGTTGAGGGAGCGGATGCCGCCACCGACGGGCGTGGTCAGCGGGCCCTTGATCGATACCACATAATcacgca > 7:204272/1‑149 (MQ=255) | GGTGACCCCCATTTCCTCCTTGAGAAACTTGATCACCTTGTTCGCCTCGGGCGACCCGGCCTTCCACTCGATGCCGGCATAGATGTCTTCGGAGTTCTCGCGGAAGATCACCATGTCGACGTCGCCCGGCTTTTTCACCGGGCTTGGCACACCCTGGAACCACAGCACCGGCCGCAGGCATACATACAGGTCCAGTTGCTGGCGCAGGGCCACGTTGAGGGAGCGGATGCCGCCACCGACGGGCGTGGTCAGCGGGCCCTTGATCGATACCACATAATCACGCA > NC_002947/4521174‑4521457 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |