| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,521,977 | G→T | 7.4% | intergenic (‑240/‑175) | icd ← / → idh | NADP(+)‑specific isocitrate dehydrogenase/isocitrate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,521,977 | 0 | G | T | 7.4% | 191.5 / 3.8 | 62 | intergenic (‑240/‑175) | icd/idh | NADP(+)‑specific isocitrate dehydrogenase/isocitrate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base G (28/29); new base T (2/3); total (30/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
GCATTGCTGCTTAGTCTTTGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTACCCTGCGCACCACGAGACTCGAG > NC_002947/4521835‑4522122 | gcATTGCTGCTTAGTCTTTGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGc < 2:232967/149‑1 (MQ=255) ttGCTGCTTAGTCTTTGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGc < 8:228551/146‑1 (MQ=255) ttGCTGCTTAGTCTTTGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGc > 7:228551/1‑146 (MQ=255) ttAGTCTTTGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCt > 4:158186/1‑149 (MQ=255) aGTCTTTGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTg < 3:293664/148‑1 (MQ=255) aGTCTTTGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTg < 3:158186/148‑1 (MQ=255) gTCTTTGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATg < 4:171401/134‑1 (MQ=255) gTCTTTGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATg > 3:171401/1‑134 (MQ=255) cTTTGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATgg > 3:43750/1‑133 (MQ=255) cTTTGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATgg < 4:43750/133‑1 (MQ=255) tttGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATTCATGGccta < 3:37493/136‑3 (MQ=255) tttGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATTCATGGccta > 4:37493/1‑134 (MQ=255) gTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTa < 8:204337/148‑1 (MQ=255) tCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTAcc > 7:175045/1‑149 (MQ=255) tCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTAcc < 2:289940/149‑1 (MQ=255) ttATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCACAAATGGTTTGGTATACTCCGCCGCGAACGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCATGGGTTGTTACCg > 3:341073/1‑148 (MQ=255) gATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTg < 4:346916/149‑1 (MQ=255) cACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCt > 7:104853/1‑149 (MQ=255) cACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCACTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTAcc > 8:324391/1‑129 (MQ=255) ccTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACtt > 2:12856/1‑136 (MQ=255) ccTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACtt < 1:12856/136‑1 (MQ=255) gCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGc > 2:73529/1‑148 (MQ=255) gCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGc < 1:73529/148‑1 (MQ=255) aTTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATcca > 5:18124/1‑149 (MQ=255) cccAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCAt > 4:132032/1‑148 (MQ=255) cAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCAc < 6:18124/149‑1 (MQ=255) aaaTGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCAcc > 8:85269/1‑149 (MQ=255) tataCTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGAc > 1:125200/1‑112 (MQ=255) tataCTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGAc < 2:125200/112‑1 (MQ=255) ataCTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGa < 1:326062/110‑1 (MQ=255) ataCTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGa > 2:326062/1‑110 (MQ=255) taCTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGAt > 5:285028/1‑121 (MQ=255) taCTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGAt < 6:285028/121‑1 (MQ=255) gccgcGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACtt < 3:132032/149‑1 (MQ=255) ctaaGGGTCATCGGGGCGAATCCCATGAAAATGCGGACAGCCCTAGTCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCa < 4:341073/147‑1 (MQ=255) tCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCt > 5:130935/1‑149 (MQ=255) ggCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGc > 8:158307/1‑132 (MQ=255) ggCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGc < 7:158307/132‑1 (MQ=255) ggCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAggg < 7:85269/149‑1 (MQ=255) gAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGa > 6:256990/1‑149 (MQ=255) gAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGa > 6:280084/1‑149 (MQ=255) ccAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGa > 4:20768/1‑73 (MQ=255) ccAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGa < 3:20768/73‑1 (MQ=255) ccAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATgcgc > 6:297634/1‑149 (MQ=255) ccAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATgcgc < 6:130935/149‑1 (MQ=255) gAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTAc > 3:136501/1‑149 (MQ=255) cGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTACCCTgcg < 8:104853/148‑1 (MQ=255) ggACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTACCCTGCGca < 5:256990/149‑1 (MQ=255) ccGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGNATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTACCCTGCGcacca < 1:110867/149‑1 (MQ=255) ccGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTAGACCCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTACCCTGCGcacca < 1:106982/149‑1 (MQ=255) gctttatggCCATTCATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTACCCTgc > 7:116603/8‑142 (MQ=255) gctttatggCCATTCATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTACCCTgc < 8:116603/135‑1 (MQ=255) cGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTACCCTGCGcaccac < 8:175045/149‑1 (MQ=255) cccTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTACCCTGCGcaccac > 1:177494/1‑147 (MQ=255) cccTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTACCCTGCGcaccac > 4:15302/1‑147 (MQ=255) cTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGATGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTACCCTGCGCACCACgaga > 8:13696/1‑149 (MQ=255) ggCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGATGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTACCCTGCGCACCACGAGACTc < 7:13696/149‑1 (MQ=255) ccATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTACCCTg > 7:66359/1‑132 (MQ=255) ccATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTACCCTGCGCACCACGAGACTCGa < 4:136501/149‑1 (MQ=255) acATTAATGGCCATAAAGCCTGGGTTGTTACCGCAGGTCATCACTTGACGATCGACTGATGCATCCACCATCACCGATCGCAGCCTCTCTACTTTCCGCTCATGGCTCTGCCAGGGCGATGCGCCTACCCTg < 8:66359/131‑1 (MQ=255) cATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTACCCTGCGCACCACGAGACTCGAg > 3:160581/1‑149 (MQ=255) cATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTACCCTGCGCACCACGAGACTCGAg < 5:297634/149‑1 (MQ=255) | GCATTGCTGCTTAGTCTTTGGTCTTATAAATGGGCCGATATCACTTGGCCTTGCTGATTAGCCCAAATGGTTTGGTATACTCCGCCGCGACCGAAGGGTCATCGGGGCGAATCCCAGGAAAATGCGGACCGCCCTAGGCCATGAATGGCCATAAAGCCTGGGTTGTTACCGCAGCTCAGCACTTGACGCTCGACTGATGCATCCACCATCACCGCTCGCAGCCTCTCGACTTTCCGCTCATGGCGCTGCCAGGGCGATGCGCCTACCCTGCGCACCACGAGACTCGAG > NC_002947/4521835‑4522122 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |