| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,796,619 | A→G | 13.3% | intergenic (‑177/+41) | pvdH ← / ← PP_4224 | diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,796,619 | 0 | A | G | 13.3% | 101.3 / 8.4 | 46 | intergenic (‑177/+41) | pvdH/PP_4224 | diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase |
| Reads supporting (aligned to +/- strand): ref base A (19/19); new base G (4/2); total (23/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.66e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.16e-01 | |||||||||||
GACATGGGTAAATCCTCGCGAGCAAGCGGATGGGCGGTTATCGCTTTGGAAACGCTTGAGTGGGGGGAGGATTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGACGCGCCGGTACCTGCAACAAAACCCGCAAGCCGTCACTACGGCTGTCAAAGCGCAGGCTACCGGCACACCGCTGCACGATCGCCT > NC_002947/4796480‑4796757 | gACATGGGTAAATCCTCGCGAGCAAGCGGATGGGCGGTTATCGCTTTGGAAACGCTTGAGTGGGGGGAGGATTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTc < 5:266452/148‑1 (MQ=255) aTGGGTAAATCCTCGCGAGCAAGCGGATGGGCGGTTATCGCTTTGGAAACGCTTGAGTGGGGGGAGGATTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCAccc < 5:266095/149‑1 (MQ=255) gggTAAATCCTCGCGAGCAAGCGGATGGGCGGTTATCGCTTTGGAAACGCTTGAGTGGGGGGAGGATTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCcgc > 6:233662/1‑149 (MQ=255) ggTAAATCCTCGCGAGCAAGCGGATGGGCGGTTATCGCTTTGGAAACGCTTGAGTGGGGGGAGGATTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCcgc > 5:206967/1‑148 (MQ=255) gTAAATCCTCGCGAGCAAGCGGATGGGCGGTTATCGCTTTGGAAACGCTTGAGTGGGGGGAGGATTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCcgcg > 7:22193/1‑148 (MQ=255) tAAATCCTCGCGAGCAAGCGGATGGGCGGTTATCGCTTTGGAAACGCTTGAGTGGGGGGAGGATTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TGAACCCGCTCCTACGGGCGGGTTTACCCGCGaa < 6:219648/149‑1 (MQ=37) tAAATCCTCGCGAGCAAGCGGATGGGCGGTTATCGCTTTGGAAACGCTTGAGTGGGGGGAGGATTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCcgcg > 4:106243/1‑147 (MQ=255) aaaTCCTCGCGAGCAAGCGGATGGGCGGTTATCGCTTTGGAAACGCTTGAGTGGGGGGAGGATTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCCGCGaa < 3:106243/148‑1 (MQ=255) aTCCTCGCGAGCAAGCGGATGGGCGGTTATCGCTTTGGAAACGCTTGAGTGGGGGGAGGATTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCCGCGAagag < 4:55163/149‑1 (MQ=255) cTCGCGAGCAAGCGGATGGGCGGTTATCGCTTTGGAAACGCTTGAGTGGGGGGAGGATTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCgg > 3:342241/1‑130 (MQ=255) cTCGCGAGCAAGCGGATGGGCGGTTATCGCTTTGGAAACGCTTGAGTGGGGGGAGGATTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCgg < 4:342241/130‑1 (MQ=255) cAAGCGGATGGGCGGTTATCGCTTTGGAAACGCTTGAGTGGGGGGAGGATTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAgg < 8:22193/149‑1 (MQ=255) gCGGATGGGCGGTTATCGCTTTGGAAACGCTTGAGTGGGGGGAGGATTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCAccc < 8:245433/127‑1 (MQ=255) gCGGATGGGCGGTTATCGCTTTGGAAACGCTTGAGTGGGGGGAGGATTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCAccc > 7:245433/1‑127 (MQ=255) gAAACGCTTGAGTGGGGGGAGGATTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGAcgcg > 5:115301/1‑149 (MQ=255) aaCGCTTGAGTGGGGGGAGGATTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGACgcgc < 5:233662/148‑1 (MQ=255) aCGCTTGTGTGGGGGGAGGATTTAGCGGTTGTTAGGCTTTTTTATTTTTGTCTTTGCTGGCCTCTTCG‑CGGG‑TAAACCGGCCGGTAGTCGGGGTTTAACCCGGGATTTGGCAAGCACAGGCGATAAACATCAATGCCCAGGACGCGCCg < 6:115301/149‑1 (MQ=255) aCGCTTGAGTGGGGGGAGGATTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCGCCGGT‑TAAACCCCCCCTTA‑GAGCGGGTTGAACCGCCCAGAGGGCCGCACCCGGGCAAAACAACAAATGCCACGACgcgcgg > 6:224940/1‑147 (MQ=255) gCTTGAGTGGGGGGAGGATTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TGAACCCGCTCCTAcgggcggg > 3:94491/1‑92 (MQ=25) gCTTGAGTGGGGGGAGGATTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TGAACCCGCTCCTAcgggcggg < 4:94491/92‑1 (MQ=25) gaggaTTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAg > 4:242616/1‑125 (MQ=255) gaggaTTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAg < 3:242616/125‑1 (MQ=255) gtaTTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTCCTGGCCTCTTCG‑CGGG‑TAAACCCGCCGTTTGCAGCGGGTTCACCCGCTAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGACGCGCCGGTACCTGCAACAAAAcc < 5:224940/147‑1 (MQ=255) gaTTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTAG‑CGGGTTAAACCCCCCCG‑AGGAGCGGGGTGACCCGCGAAGAGGGCACCACACGCGATAAAAAAAAAAGCCCCAGACGCGCCGGGAACAGCAACAAAAacc > 2:161587/1‑149 (MQ=255) gttgttACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGACGCGCCGGTACCTGCAACAAAACCCGCAAGCCGt > 6:334429/1‑149 (MQ=255) aCGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGGACGAGCGGGTTAACCCGCGAAGAGGCCCGCACAGGCGAAAAAACTCAATGCCCAGGCCGCGCCGGTACCTGCCACAAAACCCCCAAGCCGTCACAAc > 4:203850/1‑149 (MQ=25) gATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGccc < 4:69547/101‑1 (MQ=255) gATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGccc > 3:69547/1‑101 (MQ=255) tttttGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGTAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCGATACACATCAATGCCCa < 4:51163/95‑1 (MQ=255) tttttGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCGATACACATCAATGCCCa > 3:51163/1‑95 (MQ=255) tGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGACGCGCCGGTACCTGCAACAAAACCCGCAAGCCGTCACTACGGCTGTCAAAgcgc < 1:161587/148‑1 (MQ=255) gtgtgtgGTGCCCTCTGCG‑CGGT‑AAAACCCCCCCTTCGCCGGGGTTTCACCGGCAAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGACGCGCCGGTACCTGCAACAAAACCCGCAAGCCGTCACTACGGCTGTCAAAGCGCa < 6:59862/145‑1 (MQ=255) tGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGACGCGCCGGTACCTGCAACAAAACCCGCAAGCCGTCACTACGGCTGTCAAAGCGCAGGCt < 8:2564/144‑1 (MQ=255) tGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGACGCGCCGGTACCTGCAACAAAACCCGCAAGCCGTCACTACGGCTGTCAAAGCGCAGGCt > 7:2564/1‑144 (MQ=255) ctctTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGACGCGCCGGTACCTGCAACAAAACCCGCAAGCCGTCACTa > 1:312944/1‑120 (MQ=255) ctctTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGACGCGCCGGTACCTGCAACAAAACCCGCAAGCCGTCACTa < 2:312944/120‑1 (MQ=255) ctctTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGACGCGCCGGTACCTGCAACAAAACCCGCAAGCCGTCACTACGGCTGTCAAAGCGCAGGCTACCGGcaca > 1:107849/1‑149 (MQ=255) g‑cgGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGACGCGCCGGTACCTGCAACAAAACCCGCAAGCCGTCACTACGGCTGTCAAAGCGCAGGCTACCGGCACACCGCt < 2:107849/148‑1 (MQ=255) ggg‑TGAACCCGCTCCTACGGGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGACGCGCCGGTACCTGCAACAAAACCCGCAAGCCGTCACTACGGCTGTCAAAGCGCAGGCTACCGGCACACCGCTGCa > 2:336835/1‑149 (MQ=38) gg‑TGAACCCGCTCCTACGGGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGACGCGCCGGTACCTGCAACAAAACCCGCAAGCCGTCACTACGGCTGTCAAAGCGCAGGCTACCGGCACACCGCTGCAc > 4:331601/1‑149 (MQ=38) gg‑TAAACCCGCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGACGCGCCGGTACCTGCAACAAAACCCGCAAGCCGTCACTACGGCTGTCAAAGCGCAGGCTACCGGCACACCGCTGCAc > 7:171205/1‑149 (MQ=255) tgaaCCCGCTCCTACGGGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGACGCGCCGGTACCTGCAACAAAACCCGCAAGCCGTCACTCCGGCTGTCAAAGCGCAGGCTACCGGCACACCCATGCACGa > 7:30757/3‑149 (MQ=37) aaCCCGCTCCTACGGGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGACGCGCCGGTACCTGCAACAAAACCCGCAAGCCGTCACTACGGCTGTCAAAGCGCAGGCTACCGGCACACCGCTGCAc < 6:98754/145‑1 (MQ=38) aaCCCGCTCCTACGGGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGACGCGCCGGTACCTGCAACAAAACCCGCAAGCCGTCACTACGGCTGTCAAAGCGCAGGCTACCGGCACACCGCTGCAc > 5:98754/1‑145 (MQ=38) aaCCCGCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGACGCGCCGGTACCTGCAACAAAACCCGCAAGCCGTCACTACGGCTGTCAAAGCGCAGGCTACCGGCACACCGCTGCACGATc < 5:334429/149‑1 (MQ=255) cgcccgTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGACGCGCCGGTACCTGCAACAAAACCCGCAAGCCGTCACTACGGCTGTCAAAGCGCAGGCTACCGGCACACCGCTGCACGATCGCCt < 3:203850/149‑1 (MQ=255) aGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGACGCGCCGGTACCTGCAACAAAACCCGCAAGCCGTCACTACGGCTGTCAAAGCGCAg < 3:100102/113‑1 (MQ=255) aGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGACGCGCCGGTACCTGCAACAAAACCCGCAAGCCGTCACTACGGCTGTCAAAGCGCAg > 4:100102/1‑113 (MQ=255) | GACATGGGTAAATCCTCGCGAGCAAGCGGATGGGCGGTTATCGCTTTGGAAACGCTTGAGTGGGGGGAGGATTTAGCGGTTGTTACGCGATTTTATTTTTGTCTGTGCTGGCCTCTTCG‑CGGG‑TAAACCCGCCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGCACAGGCGATAAACATCAATGCCCAGGACGCGCCGGTACCTGCAACAAAACCCGCAAGCCGTCACTACGGCTGTCAAAGCGCAGGCTACCGGCACACCGCTGCACGATCGCCT > NC_002947/4796480‑4796757 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |