| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,944,743 | A→G | 5.5% | intergenic (+103/+695) | PP_5673 → / ← flhB | D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,944,743 | 0 | A | G | 5.5% | 216.9 / 2.1 | 74 | intergenic (+103/+695) | PP_5673/flhB | D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein |
| Reads supporting (aligned to +/- strand): ref base A (31/38); new base G (2/2); total (33/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01 | |||||||||||
ACTGGTACTTATCTTAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATACACAGACCAGCAGCACCAC > NC_002947/4944595‑4944889 | aCTGGTACTTATCTTAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCaaa < 5:272660/149‑1 (MQ=255) gTACTTATCTTAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGgc < 2:3195/149‑1 (MQ=255) cTTATCTTAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGgcgc < 5:82447/148‑1 (MQ=255) tCTTAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGTTTGAGCGGCGCttaa < 1:102916/148‑4 (MQ=255) aaaCAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCtt > 6:11001/1‑148 (MQ=255) aacaacTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTGGTACAATCAGGCTATTGGATGTGGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCGAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATGtt > 2:176012/1‑147 (MQ=255) aacaacTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGa < 7:32447/149‑1 (MQ=255) acaacTTGGATCCTACCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATAATGCTTTTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAGCCGCCGCTCAAACGGCGCTCGATCTTGa < 1:15371/149‑1 (MQ=255) cTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGTCGCTCGATCTTGAGCAAt > 3:182396/1‑149 (MQ=255) ggATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATc < 1:184567/147‑1 (MQ=255) aTCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCa < 5:126157/148‑1 (MQ=255) gCCAATACTGCTGACCGAACAACAAGTATAATTCGAACCATCAGGCTATAGCATGTCGATGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACgg > 3:84214/1‑149 (MQ=255) cAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACgg < 6:333495/118‑1 (MQ=255) aaTACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGa < 1:201714/130‑1 (MQ=255) aaTACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGa > 2:201714/1‑130 (MQ=255) gctgACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAAc > 4:45598/1‑149 (MQ=255) cGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCaa < 3:340052/149‑1 (MQ=255) cGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCaa > 5:273980/1‑149 (MQ=255) gAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAAc > 4:183022/1‑149 (MQ=255) caacaaTTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTg < 4:84214/148‑1 (MQ=255) aGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGACGCTCAAACGGCGCTCGATCTTGAGCAATCCAAGAAACGGTCAAGAAACTTTCAACTGTCAcga > 5:316097/1‑148 (MQ=255) aaTTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTc < 2:298740/140‑1 (MQ=255) aaTTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTc > 1:298740/1‑140 (MQ=255) cATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACCGTCACGCCGCAAATCcggcg > 3:196425/1‑148 (MQ=255) aTCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCcggcgg > 8:54236/1‑148 (MQ=255) tCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGaa < 6:273980/149‑1 (MQ=255) aGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCaa > 4:97102/1‑111 (MQ=255) aGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCaa < 3:97102/111‑1 (MQ=255) aGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACt > 2:118380/1‑124 (MQ=255) aGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACt < 1:118380/124‑1 (MQ=255) aGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATc < 5:11001/149‑1 (MQ=255) aGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACCGTCACGCCGCAAATCCGGCGGAATc < 4:196425/149‑1 (MQ=255) ggCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCg > 6:334203/1‑149 (MQ=255) ggCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCg > 2:170080/1‑149 (MQ=255) ttGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGaaa < 7:96121/148‑1 (MQ=255) gATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCa < 2:46595/148‑1 (MQ=255) gATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAg < 3:183022/149‑1 (MQ=255) tGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGa < 1:170080/149‑1 (MQ=255) tttttCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATg < 3:221277/140‑1 (MQ=255) tttttCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATg > 4:221277/1‑140 (MQ=255) ggTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGaaa > 7:143868/1‑122 (MQ=255) ggTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGaaa < 8:143868/122‑1 (MQ=255) tAATTTATTGATCACCCAATTGAGATTAAG‑AGCCGCTCAAACGGCGCTCGATCTTGAGCAATACCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCGGGATGGTCGGGAACGCGGCAAAGTc > 8:200221/1‑148 (MQ=255) aTTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGa < 5:116209/116‑1 (MQ=255) aTTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGa > 6:116209/1‑116 (MQ=255) aTTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCgg < 2:262454/139‑1 (MQ=255) aTTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCgg > 1:262454/1‑139 (MQ=255) tttATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCTGGATGGTCGGGAACGCGGCAAAGTCGAGc < 7:200221/149‑1 (MQ=255) aTTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAgg > 7:302661/1‑119 (MQ=255) aTTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAgg < 8:302661/119‑1 (MQ=255) ttGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCggg < 5:334203/148‑1 (MQ=255) ttGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGgc > 5:185041/1‑149 (MQ=255) ttGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGgc < 4:182396/149‑1 (MQ=255) gATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAAcgc > 6:364485/1‑130 (MQ=255) gATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAAcgc < 5:364485/130‑1 (MQ=255) aTCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGt > 7:208230/1‑137 (MQ=255) aTCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGt < 8:208230/137‑1 (MQ=255) aCCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTc > 6:86544/1‑118 (MQ=255) aCCCAATTGAGATTAAG‑CGCCGCCCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGATCGGGCGCAAg < 4:162102/148‑1 (MQ=255) aaTTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAANTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGta < 1:111860/149‑1 (MQ=255) aaTTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGta > 3:232777/1‑149 (MQ=255) aaTTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGta < 1:115533/149‑1 (MQ=255) gagaTTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATaca > 3:182194/1‑149 (MQ=255) agaTTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATaca < 7:54236/148‑1 (MQ=255) atcgaG‑CGCCGTTTGAGCGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATac > 6:354237/5‑145 (MQ=38) atcgaG‑CGCCGTTTGAGCGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATac < 5:354237/141‑1 (MQ=38) aTTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATaca > 4:277076/1‑146 (MQ=255) gaG‑CGCCGTTTGAGCGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAAc > 4:153973/2‑110 (MQ=255) aaG‑CGCCTCTCAATCGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGTCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATACACAGAc < 6:316097/148‑1 (MQ=255) aaG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATACACAGAc < 3:45598/148‑1 (MQ=255) aaG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATACACAGAc < 3:277076/148‑1 (MQ=255) ccgccgcTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGGCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATACACAGACcag < 1:176012/148‑1 (MQ=255) gccgcTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATACACAGACcag > 1:150693/1‑147 (MQ=255) cTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATACACAGACca > 2:44874/1‑142 (MQ=255) cTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATACACAGACca < 1:44874/142‑1 (MQ=255) aaaCGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGc > 2:80840/1‑125 (MQ=255) aaaCGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATACACAGACCAGCAGcaccac > 5:229221/1‑149 (MQ=255) aaaCGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATACACAGACCAGCAGcaccac > 6:344718/1‑149 (MQ=255) aaaCGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTACAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGc < 1:80840/125‑1 (MQ=255) | ACTGGTACTTATCTTAAACAACTTGGATCCTAGCCAATACTGCTGACCGAACAACAAGTATAATTCGTACCATCAGGCTATTGGATGTCGTTGGTGTTTTTCGGATGGTAATTTATTGATCACCCAATTGAGATTAAG‑CGCCGCTCAAACGGCGCTCGATCTTGAGCAATCCCAGAAACGGTCAAGAAACTTTCAACTGTCACGCCGCAAATCCGGCGGAATCGGAAAGCAGGATGGTCGGGAACGCGGCAAAGTCGAGCGGGCGCAAGGCGTATACACAGACCAGCAGCACCAC > NC_002947/4944595‑4944889 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |