| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,044,492 | T→C | 6.7% | L521S (TTG→TCG) | PP_4448 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,044,492 | 0 | T | C | 6.7% | 260.7 / 6.8 | 90 | L521S (TTG→TCG) | PP_4448 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (42/41); new base C (3/3); total (46/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.33e-01 | |||||||||||
CGTAAATACGGTGTGACCTTGTTGCTGTCCAGTCAACGCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCGACGTCTGCGATCCAGCACCATCGTCTGCCGACATTCCATACTGGGAATTGTG > NC_002947/5044344‑5044636 | cGTAAATACGGTGTGACCTTGTTGCTGTCCAGTCAACGCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGtt > 8:68117/1‑149 (MQ=255) aaTACGGTGTGACCTTGTTGCTGTCCAGTCAACGCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTggg > 3:169777/1‑148 (MQ=255) aaTACGGTGTGACCTTGTTGCTGTCCAGTCAACGCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTggg > 5:46727/1‑148 (MQ=255) cGGTGTGACCTTGTTGCTGTCCAGTCAACGCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAg < 7:68117/148‑1 (MQ=255) cGGTGTGACCTTGTTGCTGTCCAGTCAACGCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAg < 7:302474/148‑1 (MQ=255) cGGTGTGACCTTGTTGCTGTCCAGTCAACGCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAg < 8:292616/148‑1 (MQ=255) cGGTGTGACCTTGTTGCTGTCCAGTCAACGCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAg < 2:134576/148‑1 (MQ=255) aCCTTGTTGCTGTCCAGTCAACGCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTga < 4:169777/149‑1 (MQ=255) cTTGTTGCTGTCCAGTCAACGCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTgaga < 1:71669/149‑1 (MQ=255) tgttgCTGTCCAGTCAACGCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGaa > 7:148380/1‑148 (MQ=255) ttgCTGTCCAGTCAACGCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAAt > 8:6582/1‑149 (MQ=255) tGTCCAGTCAACGCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGtt < 2:48599/124‑1 (MQ=255) tGTCCAGTCAACGCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGtt > 1:48599/1‑124 (MQ=255) tGTCCAGTCAACGCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGcc > 5:136787/1‑148 (MQ=255) tCCAGTCAACGCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGaaaa < 1:267976/142‑1 (MQ=255) tCCAGTCAACGCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGaaaa > 2:267976/1‑142 (MQ=255) tCCAGTCAACGCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCa > 8:227159/1‑148 (MQ=255) tCCAGTCAACGCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCAACGTGTCGGGCagcag < 1:226936/131‑5 (MQ=255) tCCAGTCAACGCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCAACGTGTCGGGCagcag > 2:226936/1‑127 (MQ=255) gcAACCCCCCTCCCCGATCTCAGAGACCATCTTCACTCAACGCAACAACTATGCCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTCCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑gg < 2:291950/148‑1 (MQ=255) aaCGCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGgc > 4:206639/1‑149 (MQ=255) aCGCCCATCCGAGATCTCAGAGACCATCTTCTGTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGAt < 5:70674/126‑1 (MQ=255) aCGCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTAAGTGCGCAGGCTGCTGACCGACACGTTGGGCAAGCTGag > 6:70674/1‑125 (MQ=255) gCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGcc > 1:176068/1‑149 (MQ=255) cccATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCg < 8:93583/149‑1 (MQ=255) aTCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGt > 3:298940/1‑148 (MQ=255) tCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCAACGTGTCGGGCag > 4:313998/1‑112 (MQ=255) tCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCAACGTGTCGGGCag < 3:313998/113‑2 (MQ=255) tCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTAAGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTg > 5:211906/1‑148 (MQ=255) tctcAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGGCCGACACCTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGctc > 2:105002/1‑149 (MQ=255) tcAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCtt > 5:65757/1‑149 (MQ=255) gagaCCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGAt < 6:46727/149‑1 (MQ=255) aCCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCgg > 1:320470/1‑149 (MQ=255) aCCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCgg < 2:320470/149‑1 (MQ=255) ccATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCggg < 3:206639/149‑1 (MQ=255) ccATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCggg < 7:286444/149‑1 (MQ=255) ccATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCggg < 6:136787/149‑1 (MQ=255) cATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTgg > 2:142808/1‑92 (MQ=255) cATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTgg < 1:142808/92‑1 (MQ=255) cATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTAAGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGAATGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCggg > 2:96234/1‑148 (MQ=255) aTCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGa > 1:192336/1‑149 (MQ=255) cttctCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGAtt > 2:269417/1‑149 (MQ=255) ctctcAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGAtt < 2:176068/146‑1 (MQ=255) ctctcAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGAtt < 1:269417/146‑1 (MQ=255) tcAATGCAACAACTTTGTCGCAATGCGCCTTACGACCCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGCCACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTgg > 7:54905/1‑149 (MQ=255) tcAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCAc < 8:148380/146‑1 (MQ=255) tcAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTgg > 6:250088/1‑149 (MQ=255) aaTGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTgag < 3:180381/95‑1 (MQ=255) aaTGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTgag > 6:339392/1‑95 (MQ=255) aaTGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTgag < 5:339392/95‑1 (MQ=255) aaTGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTgag > 4:180381/1‑95 (MQ=255) aaTGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTg < 7:6582/146‑1 (MQ=255) tGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGAt < 7:227159/149‑1 (MQ=255) tGCAACAACTTTGTCACAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGATAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGAt < 6:290563/149‑1 (MQ=255) aacaacTTTGTCGCAAAGCCCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGATGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCCGGGATTCACTGGTGATGc > 6:322368/1‑148 (MQ=255) tGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTg < 2:192336/148‑1 (MQ=255) tGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTg < 6:65757/148‑1 (MQ=255) cGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTg > 2:43981/1‑148 (MQ=255) gCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGaa < 5:250088/149‑1 (MQ=255) cAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTTGGGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGaa < 1:96234/149‑1 (MQ=255) cAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCAACTCTGGTg > 7:116269/1‑146 (MQ=255) aaTGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGctc < 7:154483/109‑1 (MQ=255) aaTGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGctc > 8:154483/1‑109 (MQ=255) aaTGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTAGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTg > 2:8400/1‑145 (MQ=255) aCGAACCCATGCTTTCAGTATTATGTGCGCAGGCTGCTGTCGGACACGTTGGGCAAGCTGATTGAGAATATGCCCAACTT‑GGGCGCCTGTGAAGCGCTGTTGTTCGGGGATTCACTGGTTATGCCATCTCTGGTGAAGATCGACGTc < 5:322368/147‑1 (MQ=255) aCGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCg < 4:154792/142‑1 (MQ=255) aCGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCg > 3:154792/1‑142 (MQ=255) gAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTg < 4:122321/115‑1 (MQ=255) gAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTg > 3:122321/1‑115 (MQ=255) cccAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGAAAGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCGACGTCTGCGAt > 4:29897/1‑148 (MQ=255) cccAAGCGATCAGAATTATGTGCGCAGGCTCCTGCCCGACACCTTCCGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCCGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCGACGTCTGCGATc > 4:324903/1‑149 (MQ=255) aaGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCGACGTCTGCGATCCAg > 1:191661/1‑149 (MQ=255) aTGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCGACGTCTGCGATCCAGCACCATCGACTGc < 6:91413/148‑1 (MQ=255) aTGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCGACGTCTGCGATCCAGCACCATCGACTGc > 5:91413/1‑148 (MQ=255) tgCTCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCGACGTCTGCGATCCAGCACCATCGTCTGCCGAc < 8:116269/149‑1 (MQ=255) tgCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCGACGTCTGCGATCCAGCACCATCGTCTGCCGa < 4:298940/148‑1 (MQ=255) gcgcAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCGACGTCTGCGATCCAGCACCATCGTCTGCCGACa > 4:70399/1‑149 (MQ=255) gcAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCGACGTCTGCGATCCAGCACCATc < 4:292202/136‑1 (MQ=255) gcAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCGACGTCTGCGATCCAGCACCATc > 3:292202/1‑136 (MQ=255) aGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCGACGTCTGCGATCCAGCACCATCGTCTGCCGACATTc > 6:337939/1‑148 (MQ=255) gctgctGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACt > 3:80955/1‑84 (MQ=255) gctgctGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACt < 4:80955/84‑1 (MQ=255) ctgctgCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GTGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCGACGTCTGCGATCCa < 5:118590/123‑1 (MQ=255) ctgctgCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCGACGTCTGCGATCCa > 6:118590/1‑123 (MQ=255) gctgcCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCGACGTCTGCGATCCAGCACCATCGTCTGCCGACATTCCATACt > 6:358713/1‑149 (MQ=255) ttgcCCAACGTGTCGGGCAAGCTGATTGAGAAAATGCCCAACTT‑gg < 4:323431/45‑1 (MQ=21) ttgcCCAACGTGTCGGGCAAGCTGATTGAGAAAATGCCCAACTT‑gg > 3:323431/2‑46 (MQ=21) gcCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCGACGTCTGCGATCCAGCACCATCGTCTGCCGACATTCCATACTgg > 3:106201/1‑148 (MQ=255) cccGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCGACGTCTGCGATCCAGCACCATCGTCTGcc > 8:95692/1‑132 (MQ=255) acGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCGACGTCTGCGATCCAGCACCATCGTCTGCCGACATTCCATACTGGGAATtgtg < 6:211906/149‑1 (MQ=255) acGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCGACGTCTGCGATCCAGCACCATCGTCTGCCGACATTCCATACTGGGAATtgtg < 2:191661/149‑1 (MQ=255) gTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCGACGTCTGCGATCCAGCACCATCGTCTGCCGACATTCCATACTgg > 8:106236/1‑139 (MQ=255) gTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCGACGTCTGCGATCCAGCACCATCGTCTGCCGACATTCCATACTgg < 7:106236/139‑1 (MQ=255) | CGTAAATACGGTGTGACCTTGTTGCTGTCCAGTCAACGCCCATCCGAGATCTCAGAGACCATCTTCTCTCAATGCAACAACTTTGTCGCAATGCGCCTTACGAACCCAAGCGATCAGAATTATGTGCGCAGGCTGCTGCCCGACACGTTGGGCAAGCTGATTGAGAAAATGCCCAACTT‑GGGCGCCGGTGAAGCGCTCTTGATCGGGGATTCACTGGTGATGCCATCTCTGGTGAAGATCGACGTCTGCGATCCAGCACCATCGTCTGCCGACATTCCATACTGGGAATTGTG > NC_002947/5044344‑5044636 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |