Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,137,665 | A→G | 7.8% | intergenic (‑64/‑149) | PP_4522 ← / → PP_4523 | LysR family transcriptional regulator/agmatinase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,137,665 | 0 | A | G | 7.8% | 141.6 / 2.6 | 51 | intergenic (‑64/‑149) | PP_4522/PP_4523 | LysR family transcriptional regulator/agmatinase |
Reads supporting (aligned to +/- strand): ref base A (24/23); new base G (2/2); total (26/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 |
GTTGGCAAAGCCCTGGTGGCGCACCACGCTGATGAAGATGCGCAGCAGTTTCAGGTCGGGCAAGGTCGAGGCCATGGTGCAACGGTTCCACAAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACACAACAATCGACCGA > NC_002947/5137527‑5137810 | gTTGGCAAAGCCCTGGTGGCGCACCACGCTGATGAAGATGCGCAGCAGTTTCAGGTCGGGCAAGGTCGAGGCCATGGTGCAACGGTTCCACAAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGaa < 8:323680/149‑1 (MQ=255) cAAAGCCCTGGTGGCGCACCACGCTGATGAAGATGCGCAGCAGTTTCATGTCGGGCAAGGTCGAGGCCATGGTGCAAAGGTTACACAAGTGTATGTGCGCGCAGTCTAACTTGTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTaa < 2:37496/148‑1 (MQ=255) cAAAGACCTGGTGGCGCACCACGCTGATGAAGATGCGCAGCAGGTTCAGGTAGGGCAAGGTCGAGGCCATGGTGCAAAGGTTCCACAACGGTATGTTCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTGCTGaaat > 1:37496/1‑144 (MQ=255) aaaGCCCTGGTGGCGCACCACGCTGATGAAGATGCTCATCAGTTTCAGGTAGGGCAAGGGCGAGGCCATGGTGCAACGGTTCCACAAGGGTCTGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGGAATTTCTGAACTaaag < 4:234989/149‑3 (MQ=255) gcACCACGCTGATGAAGATGCGCAGCAGTTTCAGGTCGGGCAAGGTCGAGGCCATGGTGCAACGGTTCCACAAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGc > 7:13536/1‑148 (MQ=255) caccacGCTGATGAAGATGCGCAGCAGTTTCAGGTCGGGCAAGGTCGAGGCCATGGTGCAACGGTTCCACAAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGa < 7:305318/149‑1 (MQ=255) caccacGCTGATGAAGATGCGCAGCAGTTTCAGGTCGGGCAAGGTCGAGGCCATGGTGCAACGGTTCCACAAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGa > 1:217161/1‑149 (MQ=255) ccacGCTGATGAAGATGCGCAGCAGTTTCAGGTCGGGCAAGGTCGAGGCCATGGTGCAACGGTTCCACAAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGAtt > 1:258833/1‑149 (MQ=255) gaAGATGCGCAGCAGTTTCAGGTCGGGCAAGGTCGAGGCCATGGTGCAACGGTTCCACAAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGAttcttc < 8:3542/143‑1 (MQ=255) gaAGATGCGCAGCAGTTTCAGGTCGGGCAAGGTCGAGGCCATGGTGCAACGGTTCCACAAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGAttcttc > 7:3542/1‑143 (MQ=255) aaGATGCGCAGCAGTTTCAGTTCGGGCAAGGTCGAGGCCATGGTGCAACGGTTCCACAAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGgc < 6:334679/148‑1 (MQ=255) cagcagTTTCAGGTCGGGCAAGGTCGAGGCCATGGTGCAACGGTTCCACAAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCtt > 4:30475/1‑148 (MQ=255) aGGTCGAGGCCATGGTGCAACGGTTCCACAAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGt < 2:217161/149‑1 (MQ=255) gTCGAGGCCATGGTGCAACGGTTCCACAAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTcc < 2:258833/149‑1 (MQ=255) cGAGGCCATGGTGCAACGGTTCCACAAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCt > 4:311266/1‑149 (MQ=255) ggCCATGGTGCAACGGTTCCACAAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGcc > 2:110331/1‑149 (MQ=255) ggCCATGGTGCAACGGTTCCACAAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGcc > 4:41680/1‑149 (MQ=255) gCAACGGTTCCACAAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCa > 7:281356/1‑148 (MQ=255) gCAACGGTTCCACAAGGGTATGTGCGCCCAGTCTAACTGCTCTACCCGCATTTAGTTCAGAAATTCCTGAACTAAGTATTTCTCGGTAGCGAttc > 2:219971/1‑95 (MQ=255) aaCGGTTCCACAAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCt > 7:99400/1‑135 (MQ=255) aaCGGTTCCACAAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCt < 8:99400/135‑1 (MQ=255) gTTCCACAAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACcaca < 8:281356/149‑1 (MQ=255) ttCCACAAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGaa > 6:121049/1‑64 (MQ=255) acaAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGcc < 8:160781/115‑1 (MQ=255) acaAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGcc > 7:160781/1‑115 (MQ=255) acaAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGaa > 3:85463/1‑118 (MQ=255) acaAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTg > 7:145265/1‑148 (MQ=255) caAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGaa > 5:27937/1‑149 (MQ=255) gggTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATgg > 4:295169/1‑149 (MQ=255) tATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTcc < 2:204996/117‑1 (MQ=255) tgCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAAc > 5:261678/1‑129 (MQ=255) tgCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAAc < 6:261678/129‑1 (MQ=255) gcgcgcAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCgcgg < 3:295169/148‑1 (MQ=255) gcAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGca < 3:41680/149‑1 (MQ=255) tAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCccgc > 4:215626/1‑110 (MQ=255) tAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCccgc < 3:215626/110‑1 (MQ=255) aaCTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTc > 7:282678/1‑149 (MQ=255) aaCTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTc > 4:146290/1‑149 (MQ=255) aCTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGTTTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTc < 8:282678/148‑1 (MQ=255) aCTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGtt < 6:27937/147‑1 (MQ=255) aCTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTc < 8:13536/148‑1 (MQ=255) ctctACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGaa < 1:110331/147‑1 (MQ=255) cccGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGaacaaa < 3:30475/146‑1 (MQ=255) cccGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGaacaaa < 4:69959/146‑1 (MQ=255) ccGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGgcg < 6:167600/121‑1 (MQ=255) ccGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGgcg > 5:167600/1‑121 (MQ=255) cGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACacaa < 3:146290/149‑1 (MQ=255) ttAGTTCAGGAATTTCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCCCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACacaa > 3:75672/1‑144 (MQ=255) ttAGTTCAGGAATTTCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCCCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACacaa < 4:75672/144‑1 (MQ=255) ttAGTTCAGGAATTTCTGAACAAAGTATTTGTCGGAAGCGATTCTTCCCCGGCGCTCGCTTGAGAAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATCGCGCGCGGCGGCACAGCTTCGATAAAACACAACAATc > 6:52160/1‑149 (MQ=255) aGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACACAACAATcgaccga > 3:130535/1‑148 (MQ=255) | GTTGGCAAAGCCCTGGTGGCGCACCACGCTGATGAAGATGCGCAGCAGTTTCAGGTCGGGCAAGGTCGAGGCCATGGTGCAACGGTTCCACAAGGGTATGTGCGCGCAGTCTAACTGCTCTACCCGCCTTTAGTTCAGAAATTCCTGAACTAAGTATTTGTCGGTAGCGATTCTTCCCCGGCGCTCGCTTGAGCAGACTTGGCCGAAATGTCCCTGCCCGCCGGCAAACCACACGTGAATGGCGCGCGGCGGCACAGGTTCGAACAAACACAACAATCGACCGA > NC_002947/5137527‑5137810 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |