Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,163,869 | T→A | 7.4% | intergenic (‑19/+105) | PP_4545 ← / ← hrpA | beta‑ketodecanoyl‑ACP synthase/ATP‑dependent helicase HrpA |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,163,869 | 0 | T | A | 7.4% | 157.8 / 2.9 | 54 | intergenic (‑19/+105) | PP_4545/hrpA | beta‑ketodecanoyl‑ACP synthase/ATP‑dependent helicase HrpA |
Reads supporting (aligned to +/- strand): ref base T (21/29); new base A (2/2); total (23/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.29e-01 |
AAGCCACCAGCTCTTCGTTGGAAATGCTCTGGGCCGGGGTGTACAGGCCGGTGCCGCTGATCACGACGTTATGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGCCACAAATAATGGAGGTTAGCCTTCCACCTGACTCCATTGTTTGCTCAATCGCTTGTCA > NC_002947/5163724‑5164016 | aagCCACCAGCTCTTCGTTGGAAATGCTCTGGGCCGGGGTGTACAGGCCGGTGCCGCTGATCACGACGTTATGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGt < 1:149536/149‑1 (MQ=255) caccaGCTCTTCGTTGGAAATGCTCTGGGCCGGGGTGTACAGGCCGGTGCCGCTGATCACGACGTTATGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCa < 3:42124/149‑1 (MQ=255) ttGGAAATGCTCTGGGCCGGGGTGTACAGGCCGGTGCCGCTGATCACGACGTTATGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCa > 7:184679/1‑141 (MQ=255) ttGGAAATGCTCTGGGCCGGGGTGTACAGGCCGGTGCCGCTGATCACGACGTTATGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCa < 8:184679/141‑1 (MQ=255) tctGGGCCGGGGTGTACAGGCCGGTGCCGCTGATCACGACGTTATGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTATTGGCACTAAAGTGCCa > 6:159268/1‑126 (MQ=255) tctGGGCCGGGGTGTACAGGCCGGTGCCGCTGATCACGACGTTATGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTATTGGCACTAAAGTGCCa < 5:159268/126‑1 (MQ=255) tctGGGCCGGGGTGTACAGGCCGGTGCCGCTGATCACGACGTTATGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTAAAGTGCCatt > 6:142626/1‑126 (MQ=255) tctGGGCCGGGGTGTACAGGCCGGTGCCGCTGATCACGACGTTATGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTAAAGTGCCatt < 5:142626/128‑3 (MQ=255) ggggTGTACAGGCCGGTGCCGCTGATCACGACGTTATGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCgcggc < 6:253594/149‑1 (MQ=255) ggggTGTACAGGCCGGTGCCGCTGATCACGACGTTATGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCgcggc < 8:188964/149‑1 (MQ=255) ggTGTACAGGGCGGTGCCGCTTATCAGGACGTTATGCACGGTCGTTCCTCTGGTCATAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGcggcgg < 8:279188/149‑1 (MQ=255) gtgtACAGGCCGGTGCCGCTGATCACGACGTTATGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCggg < 8:299194/149‑1 (MQ=255) cAGGCCGGTGCCGCTGATCACGACGTTATGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTAt > 4:300570/1‑149 (MQ=255) gCCGGTGCCGCTGATCACGACGTTATGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCg > 8:25654/1‑149 (MQ=255) gCCGGTGCCGCTGATCACGACGTTATGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCg > 7:35084/1‑149 (MQ=255) ccGGTGCCGCTGAGCACGACGTTATGCACGGTCGTTCCTCTGGTCACAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGc < 1:116684/149‑1 (MQ=255) cGCTGATCACGACGTTATGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGc > 1:230329/1‑149 (MQ=255) cGCTGATCACGACGTTATGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGc < 2:230329/149‑1 (MQ=255) gCTGATCACGACGTTATGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGcc < 7:25654/149‑1 (MQ=255) acgacgTTATGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGc < 7:250161/149‑1 (MQ=255) cgacgTTATGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATc > 6:283928/1‑130 (MQ=255) cgacgTTATGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATc < 5:283928/130‑1 (MQ=255) ttATGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCTTTGCGGccct < 3:300570/149‑2 (MQ=255) aTGCACGGTCGTTCCTCTGGTAAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCa > 4:59673/1‑148 (MQ=255) tGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCTTTGCGGcccttgg < 6:67355/149‑5 (MQ=255) aCGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGc > 1:160549/1‑149 (MQ=255) gTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCaaa < 2:160549/149‑1 (MQ=255) gTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCa > 6:34249/1‑147 (MQ=255) aaaGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGc > 7:287501/1‑122 (MQ=255) aaaGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGc < 8:287501/122‑1 (MQ=255) aaaGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCaaa < 7:212617/137‑1 (MQ=255) aaaGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCaaa < 7:207277/137‑1 (MQ=255) aaaGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCaaa > 8:212617/1‑137 (MQ=255) aaaGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCaaa > 8:207277/1‑137 (MQ=255) aaaGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGCCACaaa > 4:40370/1‑149 (MQ=255) gCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGCCACAaataat > 2:152817/1‑149 (MQ=255) ccATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGc < 6:113803/138‑1 (MQ=255) ccATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGc > 5:113803/1‑138 (MQ=255) aTCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGCCACAAATAATg > 2:319422/1‑147 (MQ=255) tCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGCCACAAATAATGGAg < 3:59673/149‑1 (MQ=255) ccACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCGTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGcc < 4:319076/133‑1 (MQ=255) ccACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCGTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGcc > 3:319076/1‑133 (MQ=255) cacaGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGCCACAAATAATGGa < 1:82652/144‑1 (MQ=255) cacaGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGCCACAAATAATGGa > 2:82652/1‑144 (MQ=255) cacaGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGCCACAAATAATGGAGGt > 5:223336/1‑147 (MQ=255) cacaGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGCCACAAATAATGGAGGt > 7:61223/1‑147 (MQ=255) caGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGCCACAAATAATGGAGGTTAGc < 8:35084/149‑1 (MQ=255) gAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGCCACAAATAATGGAGGTTAGCCTTCCAc > 7:328026/1‑142 (MQ=255) gAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGCCACAAATAATGGAGGTTAGCCTTCCAc < 8:328026/142‑1 (MQ=255) gAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGCCACAAATAATGGAGGTTAGCCTTCCACCTGACt < 8:61223/148‑1 (MQ=255) gAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGCCACAAATAATGGAGGTTAGCCTTCCACCTGACt < 6:223336/148‑1 (MQ=255) aCATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGCCACAAATAATGGAGGTTAGCCTTCCACCTGACTCCAt < 3:40370/149‑1 (MQ=255) aGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGCCACAAATAATGGAGGTTAGCCTTCCACCTGACTCCATTGTTTGc < 5:34249/149‑1 (MQ=255) ggTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGCCACAAATAATGGAGGTTAGCCTTCCACCTGACTCCATTGTTTGCt < 4:211119/149‑1 (MQ=255) aatttAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGCAGGGAATATCCGCAAAGGGCCGCAAAGCGGCACCAAACGCCCCAAAGTTTGCCACAAATAATGGAGGTTAGCCTTCCACCTGACTCCATAGTTTCATCAATCGATTg > 5:81792/3‑149 (MQ=255) ttAGTGCCAATTCAGGGGCATACGTTTAGCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGCCACAAATAATGGAGGTTAGCCTTCCACCTGACTCCATTGTTTGCTCAATCGCTTGt > 1:194223/1‑147 (MQ=255) tAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGCCACAAATAATGGAGGTTAGCCTTCCACCTGACTCCATTGTTTGCTCAATCGCTTGTc < 8:143476/147‑1 (MQ=255) tAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGCCACAAATAATGGAGGTTAGCCTTCCACCTGACTCCATTGTTTGCTCAATCGCTTGTCa < 1:319422/148‑1 (MQ=255) | AAGCCACCAGCTCTTCGTTGGAAATGCTCTGGGCCGGGGTGTACAGGCCGGTGCCGCTGATCACGACGTTATGCACGGTCGTTCCTCTGGTCAAAGGCCATCGCCACAGGGCGCTGGCTGGAAACATGACAGGTTAATGGCACTTTAGTGCCAATTCAGGGGCATACGTTTACCCCCGCGCGGCGGGCTTATCCGCCAAGGGCCGCAAAGCGGCCCCAAACGCCCCAAAGTTTGCCACAAATAATGGAGGTTAGCCTTCCACCTGACTCCATTGTTTGCTCAATCGCTTGTCA > NC_002947/5163724‑5164016 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |