Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,324,153 | T→C | 6.4% | C263R (TGC→CGC) | PP_4684 → | kinase‑like domain‑containing protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,324,153 | 0 | T | C | 6.4% | 178.3 / 2.5 | 62 | C263R (TGC→CGC) | PP_4684 | kinase‑like domain‑containing protein |
Reads supporting (aligned to +/- strand): ref base T (24/34); new base C (2/2); total (26/36) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.67e-01 |
CCTGGGCAACGCCACCTTGATCGATGGCAAGGTGGTGATCTTCGATTGCATCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCTCAACTTCTACAAAGCCTACCGCGCGCTCGTACGGGCCAAGGTCGCATTGTTCAGCATGCCGGCCGACGCTGATGGCGT > NC_002947/5324017‑5324298 | ccTGGGCAACGCCACCTTGATCGATGGCAAGGTGGTGATCTTCGATTGCATCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGgc < 4:51969/149‑1 (MQ=255) aaCGCCACCTTGATCGATGGCAAGGTGGTGATCTTCGATTGCATCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGCGCCGGGCCAGGCACTtcag < 7:73715/149‑2 (MQ=255) cGCCACCTTGATCGATGGCAAGGTGGTGATCTTCGATTGCATCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTtcatca < 5:288635/149‑1 (MQ=255) aCCTTGATCGATGGCAAGGTGGTGATCTTCGATTGCATCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGc > 8:149944/1‑147 (MQ=255) aCCTTGATCGATGGCAAGGTGGTGATCTTCGATTGCATCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCa < 3:345157/149‑1 (MQ=255) tCGATGGCAAGGTGGTGATCTTCGATTGCATCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGCGCCGGGCCAGGCACTtcagg < 3:4389/137‑3 (MQ=255) tCGATGGCAAGGTGGTGATCTTCGATTGCATCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGCGCCGGGCCAGGCACTtcagg > 4:4389/1‑135 (MQ=255) tggtgATCTTCGATTGCATCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACgggg < 7:207120/149‑1 (MQ=255) gtgATCTTCGATTGCATCGAGTTCAACGAGCCTTTCCGACTGAGCCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACgggg > 1:67706/1‑148 (MQ=255) tgATCTTCGATTGCATCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGAt < 6:261326/149‑1 (MQ=255) tgATCTTCGATTGCATCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGAt > 1:193826/1‑149 (MQ=255) gATCTTCGATTGCATCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTTGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGAt > 4:163816/1‑148 (MQ=255) tCTTCGATTGCATCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTa < 3:163816/148‑1 (MQ=255) ttCGATTGCATCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCTCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTAc < 1:62176/147‑1 (MQ=255) ttCGATTGCATCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTAc > 2:62176/1‑147 (MQ=255) cGATTGCATCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTATGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTAc < 1:146049/145‑1 (MQ=255) gATTGCATCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTTGAACTGACGGGGGATTACGAAg < 7:220414/148‑1 (MQ=255) ttGCATCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGACCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGaa > 7:19326/1‑145 (MQ=255) ttGCATCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGACCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGaa < 8:19326/145‑1 (MQ=255) tGCATCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCt > 4:315882/1‑149 (MQ=255) aTCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTtc > 4:173275/1‑105 (MQ=255) aTCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTtc < 3:173275/105‑1 (MQ=255) aTCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTgg > 8:85745/1‑148 (MQ=255) tCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGaa > 6:204165/1‑149 (MQ=255) tCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGaa > 6:333052/1‑149 (MQ=255) tCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGa > 8:61147/1‑148 (MQ=255) tCAACGAGCCTTTACGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCt > 3:179109/1‑148 (MQ=255) cAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCTc < 4:179109/148‑1 (MQ=255) cAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGAATACGAAGGCCTGGAACTGCTc < 6:219287/148‑1 (MQ=255) aaCGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTtc > 3:338806/1‑96 (MQ=255) aaCGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTtc < 6:252588/96‑1 (MQ=255) aaCGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTtc < 6:248183/96‑1 (MQ=255) aaCGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTtc > 5:252588/1‑96 (MQ=255) aaCGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTtc > 5:248183/1‑96 (MQ=255) aaCGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTtc < 4:338806/96‑1 (MQ=255) aaCGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGG‑CTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCTCAAc > 5:148173/1‑149 (MQ=255) aCGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCT‑GCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAg > 2:234653/1‑131 (MQ=255) aCGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCT‑GCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAg < 1:234653/131‑1 (MQ=255) gAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCTCAACtt < 2:67706/149‑1 (MQ=255) ccTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCTCAACTTCTa < 7:61147/149‑1 (MQ=255) ccTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCTCAACTTCTa < 3:315882/149‑1 (MQ=255) cTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCTCAACTTCTAc < 7:149944/149‑1 (MQ=255) cGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCTCAACTTCTACAAAGc < 3:211496/149‑1 (MQ=255) cTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCTCAACTTCTACAAAGCCTa < 5:204165/149‑1 (MQ=255) a‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCTCAACTTCTACAAAGCCTAc < 2:193826/147‑1 (MQ=255) ccGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCTCAACTTCTACAAAGCCTACCGCGCGCTCGTACgg < 5:333052/149‑1 (MQ=255) ccGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGAAGGGGGATTACGAAGGCCTGGAACTGCTCAACTTCTACAAAGCCTACCGCGCGCTCTTACgg < 5:249699/149‑1 (MQ=255) cGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGACGGCCTGGAACTGCTCAACTTCTACAAAGCCTACCGCGCGCTCGTACGGGCCAAgg > 8:156783/1‑149 (MQ=255) cGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAAc < 7:310433/104‑1 (MQ=255) cGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAAc > 8:310433/1‑104 (MQ=255) cGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCTCAACTTCTACAAAGCCTACCGCGCGCTCGTACGGGCCAAgg > 7:173506/1‑149 (MQ=255) gCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCTCAACTTCTACAAAGCCTACCGCGCGCTCGTACGGGCCAAGGTCGCATTGtt < 7:156783/149‑1 (MQ=255) gCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCTCAACTTCTACAAAGCCTACCGCGCGCTCGTACGGGCCAAGGTCGCATTGt < 6:76187/148‑1 (MQ=255) ccATGGACCTGGAAGACCGCGG‑CTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCTCAACTTCTACAAAGCCTACCGCGCGCTCGTACGGGCCAAGGTCGCATTGTTCa < 6:148173/149‑1 (MQ=255) tGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCTCAACTTCTACAAAGCCTACCGCGCGCTCGTACGGGCCAAGGTCGCATTGTTCAGc < 8:173506/149‑1 (MQ=255) gAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCTCAACTTCTACAAAGCCTACCGCGCGCTCGTACGGGCCAAGGTCGCAtt < 2:153704/134‑1 (MQ=255) gAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCTCAACTTCTACAAAGCCTACCGCGCGCTCGTACGGGCCAAGGTCGCAtt > 1:153704/1‑134 (MQ=255) gAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCTCAACTTCTACAAAGCCTACCGCGCGCTCGTACGGGCCAAGGTCGCATTGTTCAGCATgccg < 7:85745/147‑1 (MQ=255) gACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCTCAACTTCTACAAAGCCTACCGCGCGCTCGTACGGGCCAAGGTCGCATTGTTCa < 7:60212/136‑1 (MQ=255) gACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCTCAACTTCTACAAAGCCTACCGCGCGCTCGTACGGGCCAAGGTCGCATTGTTCa > 8:60212/1‑136 (MQ=255) gatGAAGCGCCGGGCCAGGCACTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCGTGGAACTGCTCAACTTCTACAAAGCCTACCGCGCGCTCGTACGGGCCAAGGTCGCATTGTTCAGCATGCCGGCCGACGCTGATg > 3:14924/3‑149 (MQ=255) aaGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCTAAACTTCTACAAAGCCTACCGCGCGCTCGTACTCGCCAAGGTCGCATTGTTCAGCATGCCGGCCGACGCTGAAGGCGt > 4:223539/1‑149 (MQ=255) | CCTGGGCAACGCCACCTTGATCGATGGCAAGGTGGTGATCTTCGATTGCATCGAGTTCAACGAGCCTTTCCGACTGA‑CCGACGTCTACGCCGACACCGCCTTCCTGGCCATGGACCTGGAAGACCGCGGCCTGAAGTGCCTGGCCCGGCGCTTCATCAGCCAGTACCTGGAACTGACGGGGGATTACGAAGGCCTGGAACTGCTCAACTTCTACAAAGCCTACCGCGCGCTCGTACGGGCCAAGGTCGCATTGTTCAGCATGCCGGCCGACGCTGATGGCGT > NC_002947/5324017‑5324298 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |