Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,449,171 | C→G | 10.2% | P14A (CCC→GCC) ‡ | ybeZ → | nucleoside triphosphate hydrolase domain‑containing protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,449,171 | 0 | C | G | 10.2% | 143.3 / 7.7 | 49 | P14A (CCC→GCC) ‡ | ybeZ | nucleoside triphosphate hydrolase domain‑containing protein |
Reads supporting (aligned to +/- strand): ref base C (23/21); new base G (2/3); total (25/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.67e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.86e-01 |
GGCCAGAACAGCCTGTACATACCGTTGAACGTTTCAGTGCTTTCGCCACTGCCATTCAAGGGTTATTCTTGAGTTCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATCCGCAACCGCGGCAATCAGTTCGAACTGATCGGCGAACCCAGGACCACCTCCGCTGCAGAA > NC_002947/5449023‑5449317 | ggCCAGAACAGCCTGTACATACCGTTGAACGTTTCAGTGCTTTCGCCACTGCCATTCAAGGGTTATTCTTGAGTTCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAAc < 2:328400/149‑1 (MQ=255) ggCCAGAACAGCCTGTACATACCGTTGAACGTTTCAGTGCTTTCGCCACTGCCATTCAAGGGTTATTCTTGAGTTCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAAc < 5:198395/149‑1 (MQ=255) gCCTTTACATACCGTTGCACGTTTCAGTGCTTTCGCCACTGCCATTCAAGGGTTATTCTTGAGTTCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAAGGGTTCGAgga < 6:85290/149‑2 (MQ=255) gCCTGTACATACCGTTGAACGTTTCAGTGCTTTCGCCACTGCCATTCAAGGGTTATTCTTGAGTTCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAAGGGTTCGAgga < 6:90367/149‑2 (MQ=255) ccTGTAGATAACGTTGAACGTTTCAGTGCTTTCGCCACTGCCATTCAAGGGTTATTCTTGAGTTCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAAGGGTTCGAggat < 3:189232/149‑3 (MQ=255) tttCAGTGCTTTCGCCACTGCCATTCAAGGGTTATTCTTGAGTTCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTtgtg < 5:285358/149‑1 (MQ=255) tttCGCCACTGCCATTCAAGGGTTATTCTTGAGTTCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGtt > 7:251248/1‑149 (MQ=255) gCCACTGCCATTCAAGGGTTATTCTTGAGTTCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCAAACTTGTGCGGCCAGATagac > 4:230544/1‑149 (MQ=255) aGGGTTATTCTTGAGTTCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCt > 1:88396/1‑149 (MQ=255) ttATTCTTGAGTTCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGa > 6:204964/1‑147 (MQ=255) ttATTCTTGAGTTCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGa < 5:204964/147‑1 (MQ=255) ttGAGTTCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAg > 5:54861/1‑89 (MQ=255) ttGAGTTCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAg < 6:54861/89‑1 (MQ=255) ttGAGTTCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAg > 7:99075/1‑149 (MQ=255) aGTTCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGaa < 3:56966/143‑1 (MQ=255) aGTTCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGaa > 4:56966/1‑143 (MQ=255) ttCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGACCGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCt > 7:43875/1‑149 (MQ=255) ttCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCt > 5:151898/1‑149 (MQ=255) ttCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCt > 2:184698/1‑149 (MQ=255) cAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCTAACAGCGCCTg < 8:43875/148‑1 (MQ=255) aaCTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTgg < 2:88396/148‑1 (MQ=255) aaCTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGc > 3:319010/1‑149 (MQ=255) cTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGc > 4:303535/1‑147 (MQ=255) cTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCa > 1:88747/1‑149 (MQ=255) cATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATc < 3:230544/148‑1 (MQ=255) aTCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATc > 7:57580/1‑147 (MQ=255) gCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCgaga < 4:319010/148‑1 (MQ=255) gTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATCCg > 4:189527/1‑149 (MQ=255) cTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATCCGCAACCGCgg < 8:99075/149‑1 (MQ=255) aaCGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATCCGCAACCGCGGCAAt > 7:69083/1‑148 (MQ=255) gAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATCCGCAACCGCGGCAATCAGTTCGaa < 1:184698/148‑1 (MQ=255) cACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATCCGCAACCGCGGCAATCAGTTCGAACTGATc < 6:151898/149‑1 (MQ=255) cACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATCCGCAACCGCGGCAATCAGTTCGAACTGATc < 8:69083/149‑1 (MQ=255) aCCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATCCGCAACCGCGGCAATCAGTTCGAACTGATCg < 8:251248/149‑1 (MQ=255) ccATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATCCGCAACCGCGGCAAt > 8:208716/1‑131 (MQ=255) ccATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATCCGCAACCGCGGCAAt < 7:208716/131‑1 (MQ=255) cATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATc < 4:327004/109‑1 (MQ=255) cATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATc > 3:327004/1‑109 (MQ=255) gAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATcc > 1:168522/1‑112 (MQ=255) gAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATcc < 2:168522/112‑1 (MQ=255) aaCCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATCCGCAACCGCGGCAATCAGTTCGAACTGATCGGCGAAccc < 2:88747/149‑1 (MQ=255) ccccATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATCCGCAACCGCGGCAATCAGTTCGAACTGATCGGCGAACCCAg < 8:57580/149‑1 (MQ=255) gtgggccTCGAAGGGTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATCCGCAACCGCGGCAATCAGTTCGAACTGATCGGCGAACCCAGGACCACCTc > 6:322244/6‑149 (MQ=255) cATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATCCGCAACCGCGGCAATCAGTTCGAACTGATCg < 5:170169/128‑1 (MQ=255) cATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATCCGCAACCGCGGCAATCAGTTCGAACTGATCg > 6:170169/1‑128 (MQ=255) ggccTCGAAGGGTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATCCGCAACCGCGGCAATCAGTTCGAACTGATCGGCGAACCCAGGACCACCTCCGc > 4:54700/3‑149 (MQ=255) aTCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATCCGCAACCGCGGCAATCAGTTCGAACTGATCGGCGAACCCAGGACCACCTCCg < 3:189527/148‑1 (MQ=255) tCGAACCCTTCGAGGCCGACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATCCGCAACCGCGGCAATCAGTTCGAACTGATCGGCGAACCCAGGACCACCTc < 8:103232/142‑1 (MQ=255) tCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATCCGCAACCGCGGCAATCAGTTCGAACTGATCGGCGAACCCAGGACCACCTc > 7:103232/1‑142 (MQ=255) gAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATCCGCAACCGCGGCAATCAGTTCGAACTGATCGGCGAACCCAGGACCACCTCCGCTGCAg > 6:4835/1‑148 (MQ=255) aaCCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATCCGCAACCGCGGCAATCAGTTCGAACTGATCGGCGAACCCAGGACCACCTCCGCTGCAGaa > 6:38607/1‑149 (MQ=255) | GGCCAGAACAGCCTGTACATACCGTTGAACGTTTCAGTGCTTTCGCCACTGCCATTCAAGGGTTATTCTTGAGTTCAACTCCATCGCCGTCGAGCGGCTAAAAACGACCTTGAACGCACCCATAGAACCCCATCGTTTCATCCTCGAACCCTTCGAGGCCCACCGTTTCGCCAACTTGTGCGGCCAGTTCGACGAGCACCTGCGCCTGATCGAACAGCGCCTGGCCATCGAGATCCGCAACCGCGGCAATCAGTTCGAACTGATCGGCGAACCCAGGACCACCTCCGCTGCAGAA > NC_002947/5449023‑5449317 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |