Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,532,755 C→T 10.1% G143G (GGG→GGA braD ← high‑affinity branched‑chain amino acid ABC transporter permease BraD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,532,7550CT10.1% 158.5 / 6.3 59G143G (GGG→GGAbraDhigh‑affinity branched‑chain amino acid ABC transporter permease BraD
Reads supporting (aligned to +/- strand):  ref base C (25/28);  new base T (4/2);  total (29/30)
Fisher's exact test for biased strand distribution p-value = 4.24e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.79e-01

GGATCGAGGCCATCTTGCGGTCTTGCTGGGTAGCACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGTGGAGTTACGCAGC  >  NC_002947/5532607‑5532899
                                                                                                                                                    |                                                                                                                                                  
ggATCGAGGCCATCTTGCTGTCTTGCTGGGTAGCACGGAACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGACGGAc                                                                                                                                                    >  6:339529/1‑149 (MQ=255)
ggATCGAGGCCATCTTGCGGTCTTGCTGGGTAGCACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGAc                                                                                                                                                    >  6:333674/1‑149 (MQ=255)
     gAGGCCATCTTGCGGTCTTGCTGGGTAGCACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGAc                                                                                                                                               <  8:28036/149‑1 (MQ=255)
        gCCATCTTGCGGTCTTGCTGGGTAGCACCGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTc                                                                                                                                            >  7:258156/1‑149 (MQ=255)
         ccATCTTGCGGTCTTGCTGGGTAGCACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCg                                                                                                                                           <  3:306223/149‑1 (MQ=255)
                gCGGTCTTGCTGGGTAGCACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGc                                                                                                                                     <  8:114326/148‑1 (MQ=255)
                      ttGCTGGGTAGCACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGTCGGGTCCGGCTTCgt                                                                                                                                          >  2:220525/1‑136 (MQ=255)
                      ttGCTGGGTAGCACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGTCGGGTCCGGCTTCgt                                                                                                                                          <  1:220525/137‑2 (MQ=255)
                      ttGCTGGGTAGCACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGAACGAAGCCGGACCCGACTTCGACACGCATGgcgc                                                                                                                            >  1:271559/1‑149 (MQ=255)
                        gCTGGGTAGCACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAATTCAGTTGCACGAACCCGGACCCGACTTCGACACGCATGGCGCCt                                                                                                                          >  6:169085/1‑149 (MQ=255)
                                 cACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACTCATGGCGCCTTCCAGCAgg                                                                                                                 <  5:339529/149‑1 (MQ=255)
                                 cACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAgg                                                                                                                 <  8:258156/149‑1 (MQ=255)
                                   cGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGt                                                                                                               >  8:121214/1‑149 (MQ=255)
                                          tGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGa                                                                                                                                                <  1:291293/111‑1 (MQ=255)
                                          tGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGa                                                                                                                                                >  2:291293/1‑111 (MQ=255)
                                             ggCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCt                                                                                                     >  8:218893/1‑149 (MQ=255)
                                             ggCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCt                                                                                                     >  1:129120/1‑149 (MQ=255)
                                                 gAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCt                                                                                                 <  2:129120/149‑1 (MQ=255)
                                                       ggTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTggcgg                                                                                            <  7:218893/148‑1 (MQ=255)
                                                       ggTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTggcgg                                                                                            <  2:271559/148‑1 (MQ=255)
                                                             cTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTAGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCt                                                                                     <  2:73822/149‑1 (MQ=255)
                                                                gATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGc                                                                                  >  7:287142/1‑149 (MQ=255)
                                                                         ggTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATTGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCtgt                                                                          <  1:92028/149‑1 (MQ=255)
                                                                         ggTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATCTGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCtgt                                                                          <  1:96371/149‑1 (MQ=255)
                                                                             agcagGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTa                                                                     <  8:112864/149‑1 (MQ=255)
                                                                               cagGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTggc                                                                                              <  3:33669/122‑1 (MQ=255)
                                                                               cagGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTggc                                                                                              >  4:33669/1‑122 (MQ=255)
                                                                                     cATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTg                                                               >  6:309303/1‑147 (MQ=255)
                                                                                            aCAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGGACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGTGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAg                                                      <  5:169085/149‑1 (MQ=255)
                                                                                             cAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGc                                                     >  4:52409/1‑149 (MQ=255)
                                                                                              aaaGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGc                                                     >  8:291176/1‑148 (MQ=255)
                                                                                                    cgccACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGc                                              >  5:21300/1‑149 (MQ=255)
                                                                                                    cgccACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGc                                              <  3:131809/149‑1 (MQ=255)
                                                                                                       caccaGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGATACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGc                                                     >  7:39901/1‑139 (MQ=255)
                                                                                                       caccaGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGATACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGc                                                     <  8:39901/139‑1 (MQ=255)
                                                                                                          caGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATgg                                        >  7:279286/1‑149 (MQ=255)
                                                                                                               tGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGAt                                                         <  3:61539/127‑1 (MQ=255)
                                                                                                               tGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGAt                                                         >  4:61539/1‑127 (MQ=255)
                                                                                                               tGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACt                                    >  7:120210/1‑148 (MQ=255)
                                                                                                                  aGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATc                                <  3:52409/149‑1 (MQ=255)
                                                                                                                      cTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCg                            >  5:141228/1‑149 (MQ=255)
                                                                                                                      cTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCg                            >  8:335019/1‑149 (MQ=255)
                                                                                                                      cTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCg                            >  7:88647/1‑149 (MQ=255)
                                                                                                                       ttGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCgg                           >  2:56793/1‑149 (MQ=255)
                                                                                                                           tataAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTCGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGc                        >  2:37952/1‑148 (MQ=255)
                                                                                                                                gTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACCGCTGATCAGTGCCatcgg                  <  6:21300/149‑5 (MQ=255)
                                                                                                                                 tCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCgg                 <  7:335019/149‑1 (MQ=255)
                                                                                                                                   aGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGt               >  2:142535/1‑149 (MQ=255)
                                                                                                                                    gTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGTg              <  8:88647/149‑1 (MQ=255)
                                                                                                                                     ttGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGTgg             <  1:142535/149‑1 (MQ=255)
                                                                                                                                      tGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGTgg             <  7:121214/148‑1 (MQ=255)
                                                                                                                                       gCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGTGGa            <  7:291176/148‑1 (MQ=255)
                                                                                                                                       gCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGTGGa            <  6:141228/148‑1 (MQ=255)
                                                                                                                                       gCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGTGGa            <  5:309303/148‑1 (MQ=255)
                                                                                                                                        gtcGAAGTCGGGTCCGGCTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGAACTGATCAGCGGTGCCAGGCGGGTGGAGt          >  7:36908/3‑149 (MQ=255)
                                                                                                                                         tcGAAGTCGGGTCCGGCTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGTGGAGt          >  8:183546/2‑148 (MQ=255)
                                                                                                                                         tcGAAGTCGGGTCCGGCTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGTGGAGt          >  3:10495/2‑148 (MQ=255)
                                                                                                                                           gAAGTCGGGTCCGGCTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGTGGAGTTa        <  4:10495/148‑1 (MQ=255)
                                                                                                                                           gAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGTGGAGTTAc       >  3:24997/1‑149 (MQ=255)
                                                                                                                                                cGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGTGGAGTTACGCAGc  >  2:88873/1‑149 (MQ=255)
                                                                                                                                                   aCCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGTg              <  4:179663/134‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
GGATCGAGGCCATCTTGCGGTCTTGCTGGGTAGCACGGCACATGCGGCCGAGCTTGGTGTACTTGATCACGTAGGTCAGCAGGCCCATGCCGACAAAGGCCGCCACCAGGATGAAGATCTTGGTATAAGTCAGTTGCACGAAGCCGGACCCGACTTCGACACGCATGGCGCCTTCCAGCAGGGTTGGCACGCCTTGCTGGCGGGCGCCCTGGCTGATCTGTGCGTAGTTCTGCAGGATCAGCGAAATGCCGATGGCACTGATCAGCGGTGCCAGGCGGGTGGAGTTACGCAGC  >  NC_002947/5532607‑5532899

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: