Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,541,264 | A→T | 7.5% | intergenic (‑279/+37) | PP_4872 ← / ← dnaB | hypothetical protein/replicative DNA helicase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,541,264 | 0 | A | T | 7.5% | 155.7 / 2.2 | 53 | intergenic (‑279/+37) | PP_4872/dnaB | hypothetical protein/replicative DNA helicase |
Reads supporting (aligned to +/- strand): ref base A (25/24); new base T (2/2); total (27/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01 |
AAATCGAGCGCCGCCCGCGCGGCGCATCGCGACGCAAGGCCGCTCCCACATTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATTCATCATCATCAAAGTTGTACATCCCCGGCGCCAAGTTCTCGAACCGGGTGTACTTGCCGATAAACGCCAAACGCACGAAGCCGATGGGGCCGTTACGCTGTTTGC > NC_002947/5541117‑5541410 | aaaTCGAGCGCCGCCCGCGCGGCGCATCGCGACGCAAGGCCGCTCCCACATTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCaaa < 7:275800/149‑1 (MQ=255) atgcgcCGCCCGCGCGGCGCATCGCGACGCAAGGCCGCTCCCACATTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAagcagc > 7:255187/3‑149 (MQ=255) tgcgcCGCGCGGGCGGCGCATCGCGACGCAAGGCCGCTCCCACATTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGcc > 6:183205/2‑149 (MQ=255) gcgcCGCCCGCGCGGCGCATCGCGACGCAAGGCCGCTCCCACATTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGccc > 8:252971/1‑149 (MQ=255) ccgcccgcGCGGCGCATCGCGACGCAAGGCCGCTCCCACATTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCaaa > 6:98816/1‑139 (MQ=255) ccgcccgcGCGGCGCATCGCGACGCAAGGCCGCTCCCACATTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCaaa < 5:98816/139‑1 (MQ=255) gcccgcGCGGCGCATCGCGACGCAAGGCCGCTCCCACATTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCTTTGCAGcccat < 6:232509/146‑3 (MQ=255) cccgcGCGGCGCATCGCGACGCAAGGCCGCTCCCACATTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACaa < 8:255187/149‑1 (MQ=255) cgcgcgGCGCATCGCGACGCAAGGCCGCTCCCACATTTGTTTCAACGTGCAAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAgg < 5:360429/149‑1 (MQ=255) gcgcgGCGCATCGCGCCGCAAGGCCGCTACCACATTTGGTGCAACGTGCCAAAACTGCAAGGCCTTGGTGGCCCGTTGGCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAggg < 7:242080/149‑1 (MQ=255) cgcATCGCGACGCAAGGCCGCTCCCACATTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAACACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCt < 1:270846/149‑1 (MQ=255) cgACGCAAGGCCGCTCCCACATTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCTTTGCGTCGCGATGGGCTGCTTTGCAGcccatc < 4:86436/130‑4 (MQ=255) cgACGCAAGGCCGCTCCCACATTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCTTTGCGTCGCGATGGGCTGCTTTGCAGcccatc > 3:86436/1‑127 (MQ=255) cTCCCACATTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATtca > 4:100117/1‑149 (MQ=255) tCCCACATTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAggg > 2:99747/1‑122 (MQ=255) ccACATTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAg > 5:162830/1‑139 (MQ=255) ccACATTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAg < 6:162830/139‑1 (MQ=255) ccACATTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATtcatca > 1:137002/1‑149 (MQ=255) ccACATTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATtcatca < 7:252971/149‑1 (MQ=255) ccACATTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATtcatca > 1:250785/1‑149 (MQ=255) cacaTTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTa > 5:25877/1‑137 (MQ=255) cacaTTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTa < 6:25877/137‑1 (MQ=255) acaTTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAgg < 6:104917/117‑1 (MQ=255) caTTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTa < 7:12392/139‑1 (MQ=255) caTTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTa > 8:12392/1‑139 (MQ=255) caTTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGACCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATtaatcatc > 8:247641/1‑148 (MQ=255) gttgCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTT‑GCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAagca < 4:162839/98‑1 (MQ=255) gttgCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTT‑GCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAagca > 3:162839/1‑98 (MQ=255) ttgCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATTCATCATCATCaaa < 5:183205/148‑1 (MQ=255) gCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTTCCCGGCTTGGGCGAGTTGAA‑ACGAATGTGGGGCTTTGGTCGCGATGGGCTGCAAAGCAGCCCCGTCAAGGGCCCCTGCTAACGCAATTAGTTTTTGATGATCATCAAAGtt > 1:191895/1‑149 (MQ=255) aaCGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCGTACAAGGGCCCCTGCTAACGCAATTAGTTATtc > 7:189803/1‑132 (MQ=255) aaCGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATtc < 8:189803/132‑1 (MQ=255) cGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATTCATCATCATCAAAGTTGTAc < 3:100117/149‑1 (MQ=255) ccAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATtcatcatc > 7:85600/1‑132 (MQ=255) ccAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATtcatcatc < 8:85600/132‑1 (MQ=255) aaaaCTGCAAAGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAAc > 6:239653/1‑110 (MQ=255) aaaaCTGCAAAGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAAc < 5:239653/110‑1 (MQ=255) cAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATTCATCATCATCAAAGTTGTACATCCCCGgcgc < 2:191895/147‑1 (MQ=255) gCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACACAATTAGTTATTCATCATCATCAAAGTTGTACATCCCCGGCGCCAAGtt > 4:245514/1‑149 (MQ=255) gcccgCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATTCATCATCATCAAAGTTGTACATCCCCGGCGCCAAGTTCTCGAACCGGGTGTAc > 6:98539/1‑149 (MQ=255) cccgCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATTCATCATCATCAAAGTTGTACATCCCCGGCGCCAAGTTCTCGAACCGGgt > 2:56136/1‑144 (MQ=255) cccgCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATTCATCATCATCAAAGTTGTACATCCCCGGCGCCAAGTTCTCGAACCGGgt < 1:56136/144‑1 (MQ=255) gCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATTCATCATCATCAAAGTTGTACATCCCCGGCGCCAAGTTCTCGAACCGGGTGTACTTGCCGATaa < 1:140865/149‑1 (MQ=255) gtgGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATTCATCATCATCAAAGTTGTACATCCCCGGCGCCAAGTTCTCGAACCGGGTGTACTTGCCGATAAACGCCAAACGCACGaaa > 8:234119/1‑148 (MQ=255) ccTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATTCATCATCATCAAAGTTGTACATCCCCGGCGCCAAGTTCTCGAACCGGGTGTACTTGCCGATAAACGCCAAACGCACGAAGCCGAt < 7:247641/149‑1 (MQ=255) ccTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATTCATCATCATCAAAGTTGTACATCCCCGGCGCCAAGTTCTCGAACCGGGTGTACTTGCCGATAAACGCCAAACGCACGAAGCCGAt > 4:36157/1‑149 (MQ=255) cTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATTCATCATCATCAAAGTTGTACATCCCCGGCGCCAAGTTCTCGAACCGGGTGTACTTGCCGATAAACGCCAAACGCACGAAGCCGATg > 7:229723/1‑149 (MQ=255) ttGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATTCATCATCATCAAAGTTGTACATCCCCGGCGCCAAGTTCTCGAACCGGGTGTACTTGCCGATAAACGCCAAACGCa < 2:221163/137‑1 (MQ=255) ttGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATTCATCATCATCAAAGTTGTACATCCCCGGCGCCAAGTTCTCGAACCGGGTGTACTTGCCGATAAACGCCAAACGCa > 1:221163/1‑137 (MQ=255) gCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATTCATCATCATCAAAGTTGTACATCCCCGGCGCCAAGTTCTCGAACCGGGTGTACTTGCCGATAAACGCCAAACGCACGAACCCGATggg < 7:234119/148‑1 (MQ=255) gCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACACAATTAGTTATTCATCATCATCAAAGTTGTACATCCCCGGCGCCAAGTTCTCGAACCGGGTGTACTTGCCGATAAACGCCAAACGCACGAAGCCGATgg < 3:245514/147‑1 (MQ=255) tCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATTCATCATCATCAAAGTTGTACATCCCCGGCGCCAAGTTCTCGAACCGGGTGTACTTGCCGATAAACGCCAAACGCACGAAGCCGATggg > 2:32734/1‑145 (MQ=255) tCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATTCATCATCATCAAAGTTGTACATCCCCGGCGCCAAGTTCTCGAACCGGGTGTACTTGCCGATAAACGCCAAACGCACGAAGCCGATggg < 1:32734/145‑1 (MQ=255) gcgATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATTCATCATCATCAAAGTTGTACATCCCCGGCGCCAAGTTCTCGAACCGGGTGTACTTGCCGATAAACGCCAAACGCACGAAGCCGATGGGGCCGt < 8:229723/148‑1 (MQ=255) aggggCTGCTTTGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATTGATCATCATCAAAGTTGTACATCCCCGGCGCCAAGTTCTCGAACCGGGTGTACTTGACGATAAACGCCAAACGCACGAAGCCGATGGGGCCGTTACg > 5:18977/3‑149 (MQ=255) cAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATTCATCATCATCAAAGTTGTACATCCCCGGCGCCAAGTTCTCGAACCGGGTGTACTTGCCGATAAACGCCAAACGCACGAAGCCGATGGGGCCGTTACGCTGTTTGc > 7:27798/1‑149 (MQ=255) | AAATCGAGCGCCGCCCGCGCGGCGCATCGCGACGCAAGGCCGCTCCCACATTTGTTGCAACGTGCCAAAACTGCAAGGCCATGGTTGCCCGTTGCCCGCCTTGGCCGAGTTGAA‑ACGAATGTGGGCCTTGCGTCGCGATGGGCTGCAAAGCAGCCCCTACAAGGGCCCCTGCTAACGCAATTAGTTATTCATCATCATCAAAGTTGTACATCCCCGGCGCCAAGTTCTCGAACCGGGTGTACTTGCCGATAAACGCCAAACGCACGAAGCCGATGGGGCCGTTACGCTGTTTGC > NC_002947/5541117‑5541410 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |