Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,863,468 | C→T | 7.8% | A141T (GCG→ACG) | PP_5138 ← | LysR family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,863,468 | 0 | C | T | 7.8% | 144.8 / 2.4 | 51 | A141T (GCG→ACG) | PP_5138 | LysR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base C (22/25); new base T (2/2); total (24/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.18e-01 |
CACCACCTCGATCGACACCGTCTGGCGATGGGCCAGCGGATGGTTGCGGTGCACCGCCACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAG > NC_002947/5863343‑5863599 | caccacCTCGATCGACACCGTCTGGCGATGGGCCAGCGGATGGTTGCGGTGCACCGCCACCACCAAAGGGTCAGTGCCCAATATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCt < 5:128055/149‑1 (MQ=255) tatagagatctaCAGCGTCTGGCGATGGGCCAGCGGATGGTTGCTGTGCACCGCCACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCGCGa < 8:293859/143‑1 (MQ=255) cTCGATCGACACCGTCTGGCGATGGGCCAGCGGATGGTTGCGGTGCACCGCCACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCCGCGTCGTCGCAATggg < 6:297636/129‑3 (MQ=255) cTCGATCGACACCGTCTGGCGATGGGCCAGCGGATGGTTGCGGTGCACCGCCACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCCGCGTCGTCGCAATggg > 5:297636/1‑127 (MQ=255) cTCGATCGACACCGTCTGGCGATGGGCCAGCGGATGGTTGCGGTGCACCGCCACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCCGCGTCGTCGCAATggg > 3:227654/1‑127 (MQ=255) cTCGATCGACACCGTCTGGCGATGGGCCAGCGGATGGTTGCGGTGCACCGCCACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCCGCGTCGTCGCAATggg < 4:227654/129‑3 (MQ=255) gaCACCGACTGGCGATGGGCCAGCGGATGGTTGCGGTGCACCGCCACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGa < 3:254342/139‑1 (MQ=255) gaCACCGACTGGCGATGGGCCAGCGGATGGTTGCGGTGCACCGCCACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGa > 4:254342/1‑139 (MQ=255) cacCGTCTGGCGATGGGCCAGCGGATGGTTGCGGTGCACCGCCACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTccacca < 3:303171/149‑1 (MQ=255) cGTCTGGCGATGGGCCAGCGGATGGTTGCGGTGCACCGCCACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACct > 5:128020/1‑149 (MQ=255) gTCTGGCGATGGGCCAGCGGATGGTTGCGGTGCACCGCCACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGc < 1:302546/135‑1 (MQ=255) gTCTGGCGATGGGCCAGCGGATGGTTGCGGTGCACCGCCACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGc > 2:302546/1‑135 (MQ=255) gTCTGGCGATGGGCCAGCGGATGGTTGCGGTGCACCGCCACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACctg > 1:15050/1‑149 (MQ=255) cAGCGGATGGTTGCGGTGCACCGCCACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTcc < 2:121636/127‑1 (MQ=255) cAGCGGATGGTTGCGGTGCACCGCCACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTcc > 1:121636/1‑127 (MQ=255) cAGCGGATGGTTGCGGTGCACCGCCACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGa > 4:75373/1‑149 (MQ=255) ctttggtggtggCGGTGCACCGCAACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGa > 8:149450/7‑148 (MQ=255) gATGGTTGCGGTGCACCGCCACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGc > 3:310109/1‑141 (MQ=255) gATGGTTGCGGTGCACCGCCACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGc < 4:310109/141‑1 (MQ=255) ttGCGGTGCACCGCCACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGc < 1:219624/149‑1 (MQ=255) cGGTGCACCGCCACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCCCCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCAc > 3:4762/1‑149 (MQ=255) ggTGCACCGCCACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCAc > 5:295466/1‑142 (MQ=255) ggTGCACCGCCACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCAc < 6:295466/142‑1 (MQ=255) accaccaAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTTCGTCCTTCACCCATTTCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTTCTGCTAGTTTCCGATCTCCACCGCCACTTCAACCTGc < 7:52078/147‑1 (MQ=255) accaccaAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATACTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGc > 8:52078/1‑147 (MQ=255) caccaAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCgg < 4:329872/147‑1 (MQ=255) caccaAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCgg > 3:329872/1‑147 (MQ=255) accaAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAg > 4:322639/1‑149 (MQ=255) aaaGGGTCAGTGCCCAGTATCCGACGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATTTACCCCCGGTAATCCACCAGCATATCCAGCACCTGATGCGAGTTTCCGATCTCCACCGCCACTTCAACCTGCGGAAGGCg > 8:132081/1‑149 (MQ=255) tGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGa > 1:210731/1‑146 (MQ=255) tGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGa > 6:148395/1‑146 (MQ=255) tGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATa < 5:148395/148‑1 (MQ=255) tGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAg < 2:15050/149‑1 (MQ=255) cAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCCGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCt > 1:64152/1‑149 (MQ=255) gTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCtt > 7:81250/1‑148 (MQ=255) tCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCCGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGAc < 2:64152/148‑1 (MQ=255) ccgcACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGt < 7:149450/149‑1 (MQ=255) cACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCga < 8:81250/149‑1 (MQ=255) aaCCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAAt < 3:322639/149‑1 (MQ=255) cGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATgta < 6:128020/149‑1 (MQ=255) cGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATgta < 4:4762/149‑1 (MQ=255) cGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATgta < 3:75373/149‑1 (MQ=255) cGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATgtagta < 2:210731/148‑1 (MQ=255) gTCCTCCACCCATTGCGACGACGCGGCAATGTGCACCCGGTAATGCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAg < 7:132081/149‑1 (MQ=255) cctccACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGt > 6:72126/1‑110 (MQ=255) cctccACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGt < 5:72126/110‑1 (MQ=255) tccACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATgtag < 7:268653/141‑1 (MQ=255) tccACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATgtag > 8:268653/1‑141 (MQ=255) cACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCat > 5:320321/1‑148 (MQ=255) ccATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCgaga > 7:260880/1‑130 (MQ=255) ccATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCgaga < 8:260880/130‑1 (MQ=255) | CACCACCTCGATCGACACCGTCTGGCGATGGGCCAGCGGATGGTTGCGGTGCACCGCCACCACCAAAGGGTCAGTGCCCAGTATCCGCCGCACCAACCGTGCGTCCTCCACCCATTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAG > NC_002947/5863343‑5863599 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |