Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,932,012 | A→G | 8.8% | L20L (TTG→CTG) ‡ | ubiH ← | 2‑octaprenyl‑6‑methoxyphenyl hydroxylase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,932,012 | 0 | A | G | 8.8% | 151.8 / 4.9 | 57 | L20L (TTG→CTG) ‡ | ubiH | 2‑octaprenyl‑6‑methoxyphenyl hydroxylase |
Reads supporting (aligned to +/- strand): ref base A (27/25); new base G (3/2); total (30/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.48e-01 |
CCAGTTGCTGATAAATCTGCTGGGTGCCGAATGACAATGCCGAAGAGCGCGCATCATAGCTGGGCTGGTAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCATCAGCGCCTCGATCTCGGCGACCGTACGCGGCACGCCCGAAGTCAGGATTTCACAACCTTGCC > NC_002947/5931868‑5932157 | ccAGTTGCTGATAAATCTGCTGGGTGCCGAATGACAATGCCGAAGAGCGCGCATCATAGCTGGGCTGGTAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGc > 5:286441/1‑148 (MQ=255) cAGTTGCTGATAAATCTGCTGGGTGCCGAATGACAATGCCGAAGAGCGCGCATCATAGCTGGGCTGGTAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGc > 4:77556/1‑147 (MQ=255) cAGTTGCTGATAAATCTGCTGGGTGCCGAATGACAATGCCGAAGAGCGCGCATCATAGCTGGGCTGGTAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCa < 5:197684/149‑1 (MQ=255) ttGCTGATAAATCTGCTGGGTGCCGAATGACAATGCCGAAGAGCGCGCATCATAGCTGGGCTGGTAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGc < 2:205022/149‑1 (MQ=255) gCTGATAAATCTGCTGTGTGCCTAATGACTATGCCGAAGCGCGCGCATCATAGCTGGGCTGGTAGCTGTCACCGGGGGCTAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCt < 7:331065/148‑1 (MQ=255) tGATAAATCTGCTGGGTGCCGAATGACAATGCCGAAGAGCGCGCATCATAGCTGGGCTGGTAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAgg > 5:49383/1‑144 (MQ=255) tGATAAATCTGCTGGGTGCCGAATGACAATGCCGAAGAGCGCGCATCATAGCTGGGCTGGTAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAgg < 3:151093/144‑1 (MQ=255) tGATAAATCTGCTGGGTGCCGAATGACAATGCCGAAGAGCGCGCATCATAGCTGGGCTGGTAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAgg > 4:151093/1‑144 (MQ=255) tGATAAATCTGCTGGGTGCCGAATGACAATGCCGAAGAGCGCGCATCATAGCTGGGCTGGTAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAgg < 6:49383/144‑1 (MQ=255) aTAAATCTGCTGGGTGCCGAATGACAATGCCGAAGAGCGCGCATCATAGCTGGGCTGGTAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTgcg < 3:77556/148‑1 (MQ=255) aaaTCTGCTGGGTGCCGAATGACAATGCCGAAGAGCGCGCATCATAGCTGGGCTGGTAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGcc > 2:114256/1‑148 (MQ=255) aTCTGCTGGGTGCCGAATGACAATGCCGAAGAGCGCGCATCATAGCTGGGCTGGTAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAAc < 6:286441/149‑1 (MQ=255) tCTGCTGGGTGCCGAATGACAATGCCGAAGAGCGCGCATCATAGCTGGGCTGGTAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAAc > 5:55444/1‑148 (MQ=255) ctgGGTGCCGAATGACAATGCCGAAGAGCGCGCATCATAGCTGGGCTGGTAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAg < 3:122959/147‑1 (MQ=255) gCCGAATGACAATGCCGAAGAGCGCGCATCATAGCTGGGCTGGTAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCAccgc < 1:114256/149‑1 (MQ=255) cGAAGAGCGCGCATCATAGCTGGGCTGGTAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGt > 2:153201/1‑149 (MQ=255) aaGAGCGCGCATCATAGCTGGGCTGGTAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCgat > 5:56896/1‑136 (MQ=255) aaGAGCGCGCATCATAGCTGGGCTGGTAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCgat < 6:56896/136‑1 (MQ=255) gcgcATCATAGCTGGGCTGGTAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGcc < 2:73919/137‑1 (MQ=255) gcgcATCATAGCTGGGCTGGTAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGcc > 1:73919/1‑137 (MQ=255) gcgcATCATAGCTGGGCTGGTAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCgg < 6:117429/149‑1 (MQ=255) tgggctggTAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACgg > 1:332016/1‑149 (MQ=255) tAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCgg < 2:332016/149‑1 (MQ=255) gTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGc > 4:95597/1‑149 (MQ=255) tCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCTAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGcc > 4:196554/1‑149 (MQ=255) tCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCg < 6:219618/142‑1 (MQ=255) tCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCg > 5:219618/1‑142 (MQ=255) aCCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCAc > 6:212589/1‑131 (MQ=255) aCCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCAc < 5:212589/131‑1 (MQ=255) ccGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCg > 7:319903/1‑139 (MQ=255) ccGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCg < 8:319903/139‑1 (MQ=255) ccGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTg > 1:298583/1‑148 (MQ=255) cGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCa > 1:259477/1‑149 (MQ=255) gggggCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCAt < 3:95597/149‑1 (MQ=255) gAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCATCAgcgc > 5:126829/1‑149 (MQ=255) ggCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCATCAGCGCCTc > 1:174304/1‑148 (MQ=255) gCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCATCAGCGCCTCGa > 1:334403/1‑149 (MQ=255) agcagGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCATCAGCGCCTCGATCTCGGc > 5:139558/1‑148 (MQ=255) agGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCATCAGCGCCTCGATCTCGGCGAcc < 6:55444/149‑1 (MQ=255) gATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCATCAGCGCCTCGATCTCGGCGACCg > 8:315922/1‑148 (MQ=255) cAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCATCAGCGCCTCGATCTCGGCGACCGTACGCgg < 2:334403/148‑1 (MQ=255) gCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCATCAGCGCCTCGATCTCGGCGACCATACGCGGCAc < 2:259477/149‑1 (MQ=255) tGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCATCAGCGCCTCGATCTCGGCGACCGTACGCGGCACGCCCGAAGt > 7:98344/1‑147 (MQ=255) gcgcCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCATCAGCGCCTCGATCTCGGCGACCGTACGCGGCACGCCCGAAGTCa < 1:153201/147‑1 (MQ=255) cgttggcccTGCA‑GGCCGGCGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCATCAGCGCCTCGATCTCGGCGACCGTACGCGGCACGCCCGAAGTCAGGa > 1:308883/8‑149 (MQ=255) agttggcccTGCA‑GGCCGGCGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCATCAGCGCCTCGATCTCGGCGACCGTACGCGGCACGCCCGAAGTCAGGa > 3:279269/8‑149 (MQ=255) tggcccTGCA‑GGCCGGCGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCATCAGCGCCTCGATCTCGGCGACCGTACGCGGCACGCCCGAAGTCAGGAtt > 8:236980/5‑148 (MQ=255) ccGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCATCAGCGCCTCGATCTCGGCGACCGTACGCGGCACGCCCGAAGTCAGGAtt > 5:71728/1‑149 (MQ=255) cGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCAt < 5:168489/99‑1 (MQ=255) cGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCAt > 6:168489/1‑99 (MQ=255) ggCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCATCAGCGCCTCGATCTCGGCGACCGTACGCGGCACGCCCGAAGTCAGGATTTc < 7:315922/149‑1 (MQ=255) gcccTGCA‑GGCCGGCGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCATCAGCGCCTCGATCTCGGCGACCGTACGCGGCACGCCCGAAGTCAGGATTTc < 2:308883/146‑1 (MQ=255) gcccTGCA‑GGCCGGCGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCATCAGCGCCTCGATCTCGGCGACCGTACGCGGCACGCCCGAAGTCAGGATTTc < 4:279269/146‑1 (MQ=255) cTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCATCAGCGCCTCGATCTCGGCGACCGTACGCGGCACGCCCGAAGTCAGGATTTcac > 2:343485/1‑148 (MQ=255) gCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCATCAGCGCCTCGATCTCGGCGACCGTACGCGGCACGCCCGAAGTCAGGATTTCACAACCTTGc > 5:280355/1‑149 (MQ=255) ccAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCATCAGCGCCTCGATCTCGGCGACCGTACGCGGCACGCCCGAAGTCAGGATTTCACAACCTTGcc < 6:126829/149‑1 (MQ=255) cAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCATCAGCGCCTCGATCTCGGCGACCGTACGCGGCACGCCCGAAGTCAg < 6:16014/131‑1 (MQ=255) | CCAGTTGCTGATAAATCTGCTGGGTGCCGAATGACAATGCCGAAGAGCGCGCATCATAGCTGGGCTGGTAGCTGTCACCGGGGGCGAACGGCTCGATCAGCAGGATCTTCCAGCCGCGCGCCCTGGCGCCGGCCTGCAGGGCCAACGCCAGGCTTGCGCCAACCAGGCCACCGCCGATGATCGCCAGGTTTACCCGGCTCATGCCACGGCCTTGCGGGCAGCCTGCATCAGCGCCTCGATCTCGGCGACCGTACGCGGCACGCCCGAAGTCAGGATTTCACAACCTTGCC > NC_002947/5931868‑5932157 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |