Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,949,927 | G→C | 7.0% | G215A (GGC→GCC) | ppx → | exopolyphosphatase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,949,927 | 0 | G | C | 7.0% | 180.5 / 4.2 | 57 | G215A (GGC→GCC) | ppx | exopolyphosphatase |
Reads supporting (aligned to +/- strand): ref base G (28/25); new base C (2/2); total (30/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.07e-01 |
AGATGGGTTGCGTGAGCTTTACCCAGCGCTATTTCCGCGACGGCAAGATCACCCCGGCCCGCTATGCCCAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCAAGCTGTTCAAGCTGGGCGAAGTCGACAAGATCGACTTCGACGGC > NC_002947/5949780‑5950069 | aGATGGGTTGCGTGAGCTTTACCCAGCGCTATTTCCGCGACGGCAAGATCACCCCGGCCCGCTATGCCCAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGc < 6:357345/149‑1 (MQ=255) ggTTGCGTGAGCTTTACCCAGCGCTATTTCCGCGACGGCAAGATCACCCCGGCCCGCTATGCCCAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGATAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATc < 7:267559/149‑1 (MQ=255) gTTGCGTGAGCTTTACCCAGCGCTATTTCCGCGACGGCAAGATCACCCCGGCCCGCTATGCCCAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATcc > 4:261496/1‑149 (MQ=255) cTTTACCCAGCGCTATTTCCGCGACGGCAAGATCACCCCGGCCCGCTATGCCCAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTc > 3:78941/1‑149 (MQ=255) tACCCAGCGCTATTTCCGCGACGGCAAGATCACCCCGGCCCGCTATGCCCAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTcgc < 1:79709/148‑1 (MQ=255) aGCGCTATTTCCGCGACGGCAAGATCACCCCGGCCCGCTATGCCCAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATc > 5:76008/1‑149 (MQ=255) aGCGCTATTTCCGCGACGGCAAGATCACCCCGGCCCGCTATGCCCAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATc > 7:249157/1‑149 (MQ=255) aTTTCCGCGACGGCAAGATCACCCCGGCCCGCTATGCCCAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGcgcg > 5:76420/1‑149 (MQ=255) tttCCGCGACGGCAAGATCACCCCGGCCCGCTATGCCCAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCgg > 3:300273/1‑149 (MQ=255) aaGATCACCCCGGCCCGCTATGCCCAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATc < 5:68456/110‑1 (MQ=255) aaGATCACCCCGGCCCGCTATGCCCAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATc > 6:68456/1‑110 (MQ=255) aaGATCACCCCGGCCCGCTATGCCCAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCcgg > 7:170520/1‑149 (MQ=255) aaGATCACCCCGGCCCGCTATGCCCAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGCCGATAGCCTCATccc < 8:178702/112‑2 (MQ=255) aaGATCACCCCGGCCCGCTATGCCCAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGCCGATAGCCTCATccc > 7:178702/1‑111 (MQ=255) ccccGGCCCGCTATGCCCAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAg < 4:13737/137‑1 (MQ=255) ccccGGCCCGCTATGCCCAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAg > 3:13737/1‑137 (MQ=255) ccccGGCCCGCTATGCCCAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTg < 6:76420/149‑1 (MQ=255) cccGGCCCGCTATGCCCAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAgg > 1:60694/1‑137 (MQ=255) cccGGCCCGCTATGCCCAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAgg < 2:60694/137‑1 (MQ=255) cccGGCCCGCTATGCCCAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTgg > 3:317217/1‑149 (MQ=255) tGCCCAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAgg < 4:78941/149‑1 (MQ=255) ccAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCaa > 3:219439/1‑120 (MQ=255) ccAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCaa < 4:219439/120‑1 (MQ=255) ccGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAggcctg > 4:180378/1‑149 (MQ=255) gCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAg > 4:11676/1‑129 (MQ=255) gCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAg < 3:11676/129‑1 (MQ=255) gCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGcctggcctgg < 8:249157/149‑1 (MQ=255) tGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGt > 7:314434/1‑148 (MQ=255) gAACTGATGAGCATCGAAAATGCCCTGCACCTCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTc < 6:76008/147‑1 (MQ=255) aCTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAAc < 8:170520/149‑1 (MQ=255) tgaGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCaa < 3:180378/148‑1 (MQ=255) gCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCAAGCTg > 4:299318/1‑149 (MQ=255) aTCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCaa < 7:86124/143‑1 (MQ=255) aTCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCaa > 8:86124/1‑143 (MQ=255) aTCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCAAGCTGtt < 3:261496/149‑1 (MQ=255) tCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCAAGCTGtt > 3:276312/1‑148 (MQ=255) tCGAAAATGCCCTGCACCGCCCGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTTAACGCCGAAGGCCTGGCCTGGGTCAAACGCAAGCTGtt > 7:258489/1‑148 (MQ=255) aaaaTGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTgg < 5:153790/93‑1 (MQ=255) aaaaTGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTgg > 6:153790/1‑93 (MQ=255) tGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCAAGCTGTTCAAGCTgg < 5:203919/149‑1 (MQ=255) cACCGCCTGTCCTGGGATGAGTGTATCGGCTCATCGGGCTCTATTCGAGGCATTGGCGCGGCGATCAAGGTCGGCGGGCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTTGGTCAAAGGCAAGCTGTTCTAGCTGGGc < 2:254763/144‑1 (MQ=255) cACCGCCTGACCTGGGATGAGGCTATCGGCTCATACGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCAAGCTGTTAAAGCTGGGc > 1:254763/1‑144 (MQ=255) cGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCAAGCTGTTCAAGCTGGGCGAAGTCGa > 5:119919/1‑149 (MQ=255) gCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCAAGCTGTTCAAGCTGGGCGAATTCGAc < 3:299318/149‑1 (MQ=255) cTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCAAGCTGTTCAAGCTGGGCGAAGTCGACAAGATc > 3:227325/1‑148 (MQ=255) ggATGAGCCGATAGCCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCAAGCTGTTCAAGCTGGGCGAAGTCGACAAGATc > 6:124485/1‑145 (MQ=255) ggATGAGCCGATAGCCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCAAGCTGTTCAAGCTGGGCGAAGTCGACAAGATc < 5:124485/145‑1 (MQ=255) gATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCAAGCTGTTCAAGCTGGGCGAAGTCGAc < 4:257279/138‑1 (MQ=255) gATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCAAGCTGTTCAAGCTGGGCGAAGTCGAc > 3:257279/1‑138 (MQ=255) ggCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCAAGCTGTTCAAGCTgg > 2:12984/1‑122 (MQ=255) ggCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCAAGCTGTTCAAGCTgg < 1:12984/122‑1 (MQ=255) ggCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCAAGCTGTTCAAGCTGGGCGAAGTCGACAAGATCGACTTCGa > 3:224005/1‑147 (MQ=255) ggCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCAAGCTGTTCAAGCTGGGCGAAGTCGACAAGATCGACTTCGa < 4:224005/147‑1 (MQ=255) gCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCAAGCTGTTCAAGCTGGGCGAAGTCGACAAGATCGACTTCGACgg > 7:186498/1‑149 (MQ=255) cTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCAAGCTGTTCAAGCTGGGCGAAGTCGACAAGATCGACTTCGACGGc < 8:186498/149‑1 (MQ=255) aTCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCAAGCTGTTCAAGCTGGGCGAAGTCGACAAGAta > 5:15553/1‑134 (MQ=255) aTCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCAAGCTGTTCAAGCTGGGCGAAGTCGACAAGATc < 6:15553/135‑1 (MQ=255) gCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCaa < 3:298355/100‑1 (MQ=255) gCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCaa > 4:298355/1‑100 (MQ=255) | AGATGGGTTGCGTGAGCTTTACCCAGCGCTATTTCCGCGACGGCAAGATCACCCCGGCCCGCTATGCCCAGGCCTACACTGCCGCACGCCTGGAACTGATGAGCATCGAAAATGCCCTGCACCGCCTGACCTGGGATGAGGCTATCGGCTCATCCGGCACCATTCGCGCCATCGGCGCGGCCATCAAGGCCGGCGGCCTGGGCAATGGCGAGGTCAACGCCGAAGGCCTGGCCTGGGTCAAACGCAAGCTGTTCAAGCTGGGCGAAGTCGACAAGATCGACTTCGACGGC > NC_002947/5949780‑5950069 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |