Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,970,527 | C→T | 8.7% | R256H (CGC→CAC) ‡ | PP_5236 ← | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,970,527 | 0 | C | T | 8.7% | 162.5 / 2.5 | 57 | R256H (CGC→CAC) ‡ | PP_5236 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (25/27); new base T (3/2); total (28/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.70e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ACGGCCTGCACCTTGTCAGCCTGTGGCAGCTTCAGCCGGCCTTCGACAGCCATCCAGCGCAGCGCATTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGAGGGTCCTCGTTTTCATGGTCGACCCGCTTGCCCAGATAGCGCGGCAGCGACTGTGGCAGC > NC_002947/5970383‑5970673 | aCGGCCTGCACCTTGTCAGCCTGTGGCAGCTTCAGCCGGCCTTCGACAGCCATCCAGCGCAGCGCATTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCgggg < 1:19343/149‑1 (MQ=255) ccTGCACCTTGTCAGCCTGTGGCAGCTTCAGCCGGCCATCGACAGCCATCCAGCGCAGCGAATTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGgcag > 4:84636/1‑148 (MQ=255) cTGCACCTTGTCAGCCTGTGGCAGCTTCAGCCGGCCTTCGACAGCCATCCAGCGCAGCGCATTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGgcag > 3:52144/1‑147 (MQ=255) gTCAGCCTGTGGCAGCTTCAGCCGGCCTTCGACAGCCATCCAGCGCAGCGCATTACGCAAACACTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTacac < 8:281349/147‑1 (MQ=255) aGCCTGTGGCAGCTTCAGCCGGCCTTCGACAGCCATCCAGCGCAGCGCATTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGcagcag < 6:7012/138‑1 (MQ=255) aGCCTGTGGCAGCTTCAGCCGGCCTTCGACAGCCATCCAGCGCAGCGCATTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGcagcag > 5:7012/1‑138 (MQ=255) gCAGCTTCAGCCGGCCTTCGACAGCCATCCAGCGCAGCGCATTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCGCTGGGgcggca > 6:194173/1‑129 (MQ=255) gCAGCTTCAGCCGGCCTTCGACAGCCATCCAGCGCAGCGCATTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCGCTGGGgcggca < 5:194173/129‑1 (MQ=255) cAGCTTCAGCCGGCCTTCGACAGCCATCCAGCGCAGCGCATTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGa < 7:16472/149‑1 (MQ=255) cAGCCGGCCTTCGACAGCCATCCAGCGCAGCGCATTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCtt > 8:88431/1‑149 (MQ=255) cAGCCGGCCTTCGACAGCCATCCAGCGCAGCGCATTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCt < 5:197585/148‑1 (MQ=255) gCCGGCCTTCGACAGCCATCCAGCGCAGCGCATTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGACCGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTc > 3:255308/1‑148 (MQ=255) gCCGGCCTTCGACAGCCATCCAGCGCAGCGCATTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTc > 3:140294/1‑148 (MQ=255) gCCGGCCTTCGACAGCCATCCAGCGCAGCGCATTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTc > 4:171479/1‑148 (MQ=255) cGGCCTTCGACAGCCATCCAGCGCAGCGCATTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGaa < 4:140294/149‑1 (MQ=255) ggCCTTCGACAGCCATCCAGCGCAGCGCATTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAag < 2:170863/149‑1 (MQ=255) aGCCATCCAGCGCAGCGCATTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTAcaca < 8:103612/115‑1 (MQ=255) aGCCATCCAGCGCAGCGCATTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTAcaca > 7:103612/1‑115 (MQ=255) ccATCCAGCGCAGCGCATTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGc > 8:259045/1‑115 (MQ=255) agcgcagcgcATTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATc < 7:99560/149‑1 (MQ=255) gcgcagcgcaTTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGgggcgg < 8:52404/142‑1 (MQ=255) gcgcagcgcaTTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGgggcgg > 7:52404/1‑142 (MQ=255) gcgcagcgcaTTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCa < 3:171479/149‑1 (MQ=255) gcgcaTTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCa < 7:88431/149‑1 (MQ=255) gcaTTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGaa < 4:146373/122‑1 (MQ=255) gcaTTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGaa > 3:146373/1‑122 (MQ=255) ttACACAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGgcg > 1:323138/1‑149 (MQ=255) gCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTaa < 3:84636/149‑1 (MQ=255) ccAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGGATGGCGCAGCCAGTAATAGCGAg < 6:109728/149‑1 (MQ=255) ccAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCAGCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGa < 4:255308/148‑1 (MQ=255) gcACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGAGGGTCCTCGt > 3:64207/1‑149 (MQ=255) gggCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGAGGGTCCTCGTTTTCATg < 2:323138/149‑1 (MQ=255) ggCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGAGGGTCCTCGTTTTCATgg < 4:64207/149‑1 (MQ=255) gCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGAGGGTCCTCGTTTTCATGGt > 8:204414/1‑149 (MQ=255) cATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAgg < 2:323742/65‑1 (MQ=255) cATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAgg > 1:323742/1‑65 (MQ=255) cATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGa < 5:277530/128‑1 (MQ=255) cATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGa < 1:139699/128‑1 (MQ=255) cATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGa > 6:277530/1‑128 (MQ=255) aTTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGAGGGTCCTCGTTTTCATGGTCGa > 3:242873/1‑149 (MQ=255) aTTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGAGGGTCCTCGTTTTCATCGTCGa > 6:75102/1‑149 (MQ=255) aaCAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGAGGGTCCTCGTTTTCATGGTCGACCCGCtt < 7:173657/149‑1 (MQ=255) aaCAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGAGGGTCCTCGTTTTCATGGTCGACCCGCtt < 4:52144/149‑1 (MQ=255) cTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGTGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGAgg < 4:291064/117‑1 (MQ=255) cTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGTGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGAgg > 3:291064/1‑117 (MQ=255) tCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGAGGGTCCTCGTTTTCATGGTCGACCCGCTTGCCCAGATAGCGCgg > 2:55144/1‑149 (MQ=255) aGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGc > 4:254597/1‑90 (MQ=255) aGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGc < 3:254597/90‑1 (MQ=255) ctgctgCCCCGCTGGGGCGGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGAGGGTCCTCGTTTTCATGGTCGACCCGCTTGccc > 5:194273/1‑132 (MQ=255) ctgctgCCCCGCTGGGGCGGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGAGGGTCCTCGTTTTCATGGTCGACCCGCTTGccc < 6:194273/132‑1 (MQ=255) ctgctgCCCCGCTGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGAGGGTCCTCGTTTTCATGGTCGACCCGCTTGCCCAGATAGCGCGGCAGCGa > 3:149826/1‑149 (MQ=255) tGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGAGGGTCCTCGTTTTCATGGTCGACCCGCTTGCCCAGATAGCGCGGCAGCGAc > 4:107601/1‑149 (MQ=255) tGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGAGGGTCCTCGTTTTCATGGTCGACCCGCTTGCCCAGATAGCGCGGCAGCGAc > 8:284424/1‑149 (MQ=255) gccCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGAGGGTCCTCGTTTTCATGGTCGACCCGCTTGCCCAGATAGCGCGGCAGCGACtg < 8:161224/147‑1 (MQ=255) gccCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGAGGGTCCTCGTTTTCATGGTCGACCCGCTTGCCCAGATAGCGCGGCAGCGACtg > 7:161224/1‑147 (MQ=255) ccccAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGAGGGTCCTCGTTTTCATGGTCGACCCGCTTGCCCAGATAGCGCGGCAGCGACTGTgg < 7:204414/149‑1 (MQ=255) aGCGCGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGATGCAGATCAGAACATGGCGCAGACAGTAATAGCGAGGGTCCTCGTTTTCATGGTCGACCCGCTTGCCCAGATAGCGCGGCAGCGACTGTGGCAGc > 5:247493/1‑149 (MQ=255) | ACGGCCTGCACCTTGTCAGCCTGTGGCAGCTTCAGCCGGCCTTCGACAGCCATCCAGCGCAGCGCATTACGCAAACGCTCGTCCCAGGTTGCGCACAGCGGGCCATTGACCAACAGCTCGAACGCATCAAGGCTGCCGCCCCAGCGGGGCAGCAGGTACACAGCAAGGGCCTGGATCGCTTCGAAGCAGCCGGGGCGGGCGATCAGCGCATGGCGCAGCCAGTAATAGCGAGGGTCCTCGTTTTCATGGTCGACCCGCTTGCCCAGATAGCGCGGCAGCGACTGTGGCAGC > NC_002947/5970383‑5970673 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |