Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,978,905 | A→C | 9.2% | L71R (CTG→CGG) | PP_5241 ← | LuxR family transcriptional regulator |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,978,905 | 0 | A | C | 9.2% | 124.7 / 2.9 | 42 | L71R (CTG→CGG) | PP_5241 | LuxR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base A (19/19); new base C (2/2); total (21/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCGGCTCGACAGTCTCGGCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCG‑GCCCTTGGCCCTGATCAGCGTGGCCAGCACGTCGAAAGCACGCCCACCCAACAG > NC_002947/5978762‑5979047 | gCGGCTCGACAGTCTCGGCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAg < 8:189920/149‑1 (MQ=255) gCGGCTCGACAGTCTCGGCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAg < 5:109481/149‑1 (MQ=255) tctcGGCCATGCTGCGCAGCAACGACCTGCCCAATGACTCACCAGGCTCCTCGAGGCTGATCTCCGCGGCCAGGCTATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGTCCTTGCGCAGCAAGGACACCTGAAcc > 5:327149/1‑149 (MQ=255) tcGGCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCTGCGCAAggcctttg < 8:39792/142‑7 (MQ=255) tcGGCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCTGCGCAAggcctttg > 7:39792/1‑136 (MQ=255) cAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGt < 4:328526/149‑1 (MQ=255) gCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCTGCGCAAggcctt > 8:3454/1‑128 (MQ=255) gCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCTGCGCAAggcctt < 7:3454/132‑5 (MQ=255) gCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTAt > 6:149768/1‑149 (MQ=255) gcgcAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGt > 6:282692/1‑149 (MQ=255) cgcAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTc < 4:77922/149‑1 (MQ=255) caACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGTATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGa < 7:117699/149‑1 (MQ=255) caACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGa < 5:282692/149‑1 (MQ=255) aaCGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGac > 3:71966/1‑149 (MQ=255) aCGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTc > 6:23347/1‑145 (MQ=255) aCGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTc < 5:23347/145‑1 (MQ=255) cTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGt > 8:152996/1‑149 (MQ=255) gCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGc > 6:22148/1‑149 (MQ=255) cccAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGcc > 6:173392/1‑149 (MQ=255) cccAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGc < 1:218222/148‑1 (MQ=255) cccAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGc < 5:149768/148‑1 (MQ=255) ccAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCg < 5:173392/149‑1 (MQ=255) cAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCACGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCgg < 6:145884/149‑1 (MQ=255) aaTGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGa > 3:336105/1‑149 (MQ=255) aaTGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGa < 4:71966/149‑1 (MQ=255) ctcGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGaac > 7:219998/1‑148 (MQ=255) gAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGaacaac < 7:152996/148‑1 (MQ=255) tCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTg > 7:276876/1‑149 (MQ=255) gCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCG‑Gc < 4:336105/149‑1 (MQ=255) gCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACGACTCGTCCTTGCCGACCACGCG‑GCCCTTgg < 5:22148/149‑1 (MQ=255) ccccGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCG‑GCCCTTGGc < 8:219998/149‑1 (MQ=255) ccccGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCAACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCG‑GCCCTTGGc > 2:157788/1‑149 (MQ=255) gAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGcc > 8:127075/1‑121 (MQ=255) ggATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCG‑GCCCTTGGCCCTGATCAGCGTGGCCAg > 2:243195/1‑148 (MQ=255) gATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCAACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCG‑GCCCTTGGCCCTGATCAGCGTGGCCa < 1:157788/146‑1 (MQ=255) ggTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGaccac > 4:141266/1‑61 (MQ=255) ggTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCg‑g > 4:339074/1‑110 (MQ=255) ggTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCg‑g < 3:339074/110‑1 (MQ=255) gCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCGCGCCCTTGGCCCTGATCAGCGTGGCCAGCACGTCGAAAGCACg < 1:243195/148‑1 (MQ=255) ccAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCG‑GCCCTTGGCCCTGATCAGCGTGGCCAGCACGTCGAAAGCACGcc > 8:333752/1‑148 (MQ=255) gCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCG‑GCCCTTGGCCCTGATCAGCGTGGCCAGCACGTCGAAAGCACGCCCACCCaa > 8:224311/1‑149 (MQ=255) tGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCG‑GCCCTTGGCCCTGATCAGCGTGGCCAGCACGTCGAAAGCACGCCCACCCAACAg > 5:166381/1‑148 (MQ=255) | GCGGCTCGACAGTCTCGGCCAGGCTGCGCAGCAACGACCTGCCCAATGCCTCACCAGGCTCCTCGAGGCTGATCTGCGCGGCCAGGCGATAGCCCCGGCGCGGAACGGTCTGGATCAGGCCACGGTCGCCAAAGGCCTTGCGCAGCAAGGACACCTGAACCTGCAAGTTATTGTCCTCGACCACCGTGCCGGACCACACCTGGCTGAACAACTCGTCCTTGCCGACCACGCG‑GCCCTTGGCCCTGATCAGCGTGGCCAGCACGTCGAAAGCACGCCCACCCAACAG > NC_002947/5978762‑5979047 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |