| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,021,701 | C→A | 16.2% | intergenic (‑52/‑92) | PP_5272 ← / → PP_5273 | hypothetical protein/oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,021,701 | 0 | C | A | 16.2% | 85.3 / 9.7 | 37 | intergenic (‑52/‑92) | PP_5272/PP_5273 | hypothetical protein/oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base C (17/14); new base A (3/3); total (20/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.46e-01 | |||||||||||
AGTGACCGGGCCGCAGCAGTCGTGGCAGCCGGGCTCGCACTCGAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGGTTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCCACAGCGCGCAGCACGCCGCCTCCTATTACGCCGCCAG > NC_002947/6021554‑6021836 | aGTGACCGGGCCGCAGCAGTCGTGGCAGCCGGGCTCGCACTCGAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGGTTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCa > 8:22969/1‑149 (MQ=255) ccGGGCCGCAGCAGTCGTGGCAGCCGGGCTCGCACTCGAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGGTTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCcgc < 1:46089/149‑1 (MQ=255) cGCAGCAGTCGTGGCAGCCGGGCTCGCACTCGAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGGTTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTGAACCCGCGaataa < 4:306801/149‑4 (MQ=255) tGGCAGCCGGGCTCGCACTCGAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGGTTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGccc > 7:105815/1‑149 (MQ=255) cGGGCTCGCACTCGAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGGTTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTgg < 2:115349/149‑1 (MQ=255) tCGCACTCGAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGGTTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGca > 1:339366/1‑148 (MQ=255) gAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGGTTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGtt > 5:92152/1‑138 (MQ=255) gAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGGTTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGtt < 6:92152/138‑1 (MQ=255) aaGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGGTTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCAAt < 2:339366/149‑1 (MQ=255) gcggggATGAGTTCGCGCAGGAAGTGGCTCTTGTGGCGGTTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATgg < 2:310111/147‑1 (MQ=255) aTGAGTTCGCGCAGGAAGTGGATCTTGTGGCGGTTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGc > 3:220301/1‑149 (MQ=255) tGAGTTCGCGCAGGAAGTGGATCTTGTGGCGGTTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGcc < 6:220155/135‑1 (MQ=255) tGAGTTCGCGCAGGAAGTGGATCTTGTGGCGGTTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCAGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGcc > 5:220155/1‑135 (MQ=255) gTTCGCGCAGGAAGTGGATCTTGTGGCGGTTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTGAACCCGCGaat > 2:319509/1‑101 (MQ=255) gTTCGCGCAGGAAGTGGATCTTGTGGCGGTTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTGAACCCGCGaat < 1:319509/102‑2 (MQ=255) cgcgCAGGAAGTGGATCTTGTGGCGGTTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATcc < 7:22969/148‑1 (MQ=255) gcgcAGGAAGTGGATCTTGTGGCGGTTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCt < 8:105815/148‑1 (MQ=255) aGGAAGTGGATCTTGTGGCGGTTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATGGcaca < 4:111681/135‑1 (MQ=255) aGGAAGTGGATCTTGTGGCGGTTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATGGcaca > 3:111681/1‑135 (MQ=255) aTGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATg > 8:250107/1‑148 (MQ=255) tGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGAt > 3:302120/1‑149 (MQ=255) aGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCCACAGCGCgca < 7:250107/149‑1 (MQ=255) aCAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCCACAGCGCGCAGCAcg > 1:301629/1‑149 (MQ=255) ttGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCCACAGCGCGCAGCACGCCGcctcc > 4:246987/1‑148 (MQ=255) ttGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTCTTCAGGGCCGCCCCAATGATCCACAGCGCGCAGCACGCCGcctcct > 5:1727/1‑149 (MQ=255) ggATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTc > 7:30347/1‑86 (MQ=255) ggATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTc < 8:30347/86‑1 (MQ=255) gATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATc > 4:343059/1‑82 (MQ=255) gATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATc < 3:343059/82‑1 (MQ=255) gATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCCACAGCGCGCAGCACGCCGCCTCCTAt > 1:204235/1‑148 (MQ=255) ttATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCCACAGCGCGCAGCACGCCGCCTCCTATTAc < 4:302120/149‑1 (MQ=255) taGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCACGGCCGCCCCAATCATCCACAGCGCGCAGCACGCCGCCACCTAATAcgcc > 5:53290/1‑149 (MQ=255) cTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCCACAGCGCGCAGCACGCCGCCTCCTATTACGCCGCca < 2:204235/149‑1 (MQ=255) tcgttCGCGGGTGAACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCcacatc > 6:91136/4‑115 (MQ=255) aTTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCCACAGCGCGCAGCACGCCGCCTCCTATTACGCCGCcag > 7:71749/1‑147 (MQ=255) tCGCGGGTGAACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATg > 4:8626/1‑56 (MQ=38) tCGCGGGTGAACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATg < 3:8626/56‑1 (MQ=38) | AGTGACCGGGCCGCAGCAGTCGTGGCAGCCGGGCTCGCACTCGAAAGAGGGGATGAGTTCGCGCAGGAAGTGGATCTTGTGGCGGTTGCAGGACATGACGGGATACAAGCTGACAAAGTGATTGGATTATAGGCTTATTCGCGGGTTCACCCGCGAACGAGTATGAAGCCCTCGCTGGTTGCCCGGCCGCGATGGCACAGCTTATCCTCGTCCCCCCTCCATTTTTCAGGGCCGCCCCAATGATCCACAGCGCGCAGCACGCCGCCTCCTATTACGCCGCCAG > NC_002947/6021554‑6021836 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |