Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,046,717 | G→A | 7.0% | P261S (CCG→TCG) | puuA‑II ← | glutamate‑putrescine ligase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,046,717 | 0 | G | A | 7.0% | 164.3 / 2.2 | 57 | P261S (CCG→TCG) | puuA‑II | glutamate‑putrescine ligase |
Reads supporting (aligned to +/- strand): ref base G (27/26); new base A (2/2); total (29/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.94e-01 |
CGGCATGGTTTCCAGCACGCCACCAATGGCGTGGCGCAGCGTATCGCTTTGCAGCGGATCGTCACTGGCGAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAGGCCTTCAGCGGATCCGCCACGTGGTGCAAGTTGACCTCGAACTGCGCCGGGGCGCTT > NC_002947/6046577‑6046862 | cGGCATGGTTTCCAGCACGCCACCAATGGCGTGGCGCAGCGTATCGCTTTGCAGCGGATCGTCACTGGCGAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCt > 6:203748/1‑149 (MQ=255) aTGGTTTCCAGCACGCCACCAATGGCGTGGCGCAGCGTATCGCTTTGCAGCGGATCGTCACTGGCGAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAg > 1:157893/1‑141 (MQ=255) aTGGTTTCCAGCACGCCACCAATGGCGTGGCGCAGCGTATCGCTTTGCAGCGGATCGTCACTGGCGAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAg < 2:157893/141‑1 (MQ=255) aTGGTTTCCAGCACGCCACCAATGGCGTGGCGCAGCGTATCGCTTTGCAGCGGATCGTCACTGGCGAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGc > 1:331197/1‑149 (MQ=255) gTTTCCAGCACGCCACCAATGGCGTGGCGCAGCGTATCGCTTTGCAGCGGATCGTCACTGGCGAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCAt > 3:51162/1‑149 (MQ=255) tCCAGCACGCCACCAATGGCGTGGCGCAGCGTATCGCTTTGCAGCGGATCGTCACTGGCGAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCgg > 8:44670/1‑131 (MQ=255) tCCAGCACGCCACCAATGGCGTGGCGCAGCGTATCGCTTTGCAGCGGATCGTCACTGGCGAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCgg < 7:44670/131‑1 (MQ=255) aGCACGCCACCAATGGCGTGGCGCAGCGTATCGCTTTGCAGCGGATCGTCACTGGCGAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAggt > 5:22256/1‑149 (MQ=255) cGCCACCAATGGCGTGGCGCAGCGTATCGCTTTGCAGCGGATCGTCACTGGCGAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGgtggtg < 6:22256/149‑1 (MQ=255) caccaATGGCGTGGCGCAGCGTATCGCTTTGCAGCGGATCGTCACTGGCGAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAggtggt > 7:280105/1‑145 (MQ=255) caccaATGGCGTGGCGCAGCGTATCGCTTTGCAGCGGATCGTCACTGGCGAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAggtggt < 8:280105/145‑1 (MQ=255) accaATGGCGTGGCGCAGCGTATCGCTTTGCAGCGGATCGTCACTGGCGAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCa < 5:203748/149‑1 (MQ=255) caATGGCGTGGCGCAGCGTATCGCTTTGCAGCGGATCGTCACTGGCGAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGc > 3:242252/1‑130 (MQ=255) caATGGCGTGGCGCAGCGTATCGCTTTGCAGCGGATCGTCACTGGCGAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGc < 4:242252/130‑1 (MQ=255) aTGGCGTGGCGCAGCGTATCGCTTTGCAGCGGATCGTCACTGGCGAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCAttt > 6:310078/1‑148 (MQ=255) aGCGTATCGCTTTGCAGCGGATCGTCACTGGCGAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGc < 4:51162/149‑1 (MQ=255) tATCGCTTTGCAGCGGATCGTCACTGGCGAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACg > 2:305556/1‑149 (MQ=255) tGCAGCGGATCGTCACTGGCGAAGATGTTCTTTCCGGTTTTCTTTTCCAGCAATGAAATGTGCACATGCAGAACGTTGCCTGCCTGGCGCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTg < 1:166660/147‑1 (MQ=255) gCGGATCGTCACTGGCGAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAgg < 7:78427/149‑1 (MQ=255) gCGAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGa < 5:310078/148‑1 (MQ=255) gAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGgtggtg < 8:221882/97‑1 (MQ=255) gAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCt < 2:267649/125‑1 (MQ=255) gAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCt > 1:267649/1‑125 (MQ=255) gAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCtt < 5:333865/138‑1 (MQ=255) gAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATc < 3:6313/148‑1 (MQ=255) gAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATc > 4:6313/1‑148 (MQ=255) gAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCg > 2:80062/1‑149 (MQ=255) gAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACAGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCtt > 6:333865/1‑138 (MQ=255) gAAGATGTTCTTGCCGGTTTTCGTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGgtggtg > 7:221882/1‑97 (MQ=255) ttCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGAt < 7:300882/140‑1 (MQ=255) ttCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGATTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGAt > 8:300882/1‑140 (MQ=255) gcaggTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAgg > 6:101795/4‑149 (MQ=255) gCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAg < 1:16368/148‑1 (MQ=255) ccGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGAGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAGGc < 5:164115/149‑1 (MQ=255) ccGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGAGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAGGc > 4:64128/1‑149 (MQ=255) ccGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGAGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAGGc < 3:64128/149‑1 (MQ=255) ccGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGAGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAGGc > 6:164115/1‑149 (MQ=255) gTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAGGCCtt > 7:45444/1‑149 (MQ=255) ttttCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCa < 3:102700/134‑1 (MQ=255) ttttCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCa > 4:102700/1‑134 (MQ=255) tCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAGGCCTTCAg < 8:45444/148‑1 (MQ=255) cTTGTCCAGCAATGAAATGTGCACATGCAGTCCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAGGCCTTCAGc < 2:331197/148‑1 (MQ=255) tCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAGGCCTTCAGCGGAt < 5:101795/148‑1 (MQ=255) aGCAATGAAATGTCCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAGGCCTTCAGCGGATCCGc > 3:76878/1‑149 (MQ=255) aaaTGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGCTCGCATAGTCGCAGGCCTTCAGCGGATCCGCCACgtgg > 5:89999/1‑149 (MQ=255) gCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAGGCCTTCAGCGGATCCGCCACGTGGTGCAAg > 4:172524/1‑149 (MQ=255) aTGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAGGCCTTCAGCGGATCCGCCACGTGGTGCAAGTTGa > 3:60176/1‑149 (MQ=255) gCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCtt > 2:188760/1‑91 (MQ=255) gCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCtt < 1:188760/91‑1 (MQ=255) aGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAGGCCTTCAGCGGATCCGCCACGTGGTGCAAGTTGACCTc < 4:60176/149‑1 (MQ=255) ccGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAGGCCTTCAGCGGATCCGCCACGTGGTGCAAGTTGACCTCGaa > 5:64573/1‑149 (MQ=255) cGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAGGCCTTCAGCGGATCCGCCACGTGGTGCAAGTTGACCTCGAAc > 1:43013/1‑149 (MQ=255) tgcctgccTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAGGCCTTCAGCGGATcc < 6:146779/119‑1 (MQ=255) cctgcctgGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAGGCCTTCAGCGGATCCGCCACGTGGTGCAAGTTGACCTCGAACTgcgc < 1:305556/149‑1 (MQ=255) cctgGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAGGCCTTCAGCGGATCCGCCACGTGGTGCAAGTTGACCTCGAACTGCGCCg < 3:172524/147‑1 (MQ=255) ctgGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCGTAGTCGCAGGCCTTCAGCGGATCCGCCACGTGGTGCAAGTTGACCTCGAACTGCGCCgggg < 1:80062/149‑1 (MQ=255) ctgGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAGGCCTTCAGCGGATCCGCCACGTGGTGCAAGTTGACCTCGAACTGCGCCgggg > 5:312071/1‑149 (MQ=255) ctgGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAGGCCTTCAGCGGATCCGCCACGTGGTGCAAGTTGACCTCGAACTGCGCCgggg < 4:76878/149‑1 (MQ=255) ccGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAGGCCTTCAGCGGATCCGCCACGTGGTGCAAGTTGACCTCGAACTGCGCCGGGGCGCtt > 4:204259/1‑149 (MQ=255) | CGGCATGGTTTCCAGCACGCCACCAATGGCGTGGCGCAGCGTATCGCTTTGCAGCGGATCGTCACTGGCGAAGATGTTCTTGCCGGTTTTCTTGTCCAGCAATGAAATGTGCACATGCAGACCGTTGCCTGCCTGGCCCGGGTAGGGCTTGGCCATGAAGGTGGTGTCCATTTCATGGTCGTAGGCGACGTTCTTGATCAGGCGCTTGAGCAGGATCGCATAGTCGCAGGCCTTCAGCGGATCCGCCACGTGGTGCAAGTTGACCTCGAACTGCGCCGGGGCGCTT > NC_002947/6046577‑6046862 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |