Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,080,989 | T→A | 8.5% | intergenic (+36/+26) | PP_5332 → / ← PP_5333 | hypothetical protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,080,989 | 0 | T | A | 8.5% | 128.0 / 3.5 | 47 | intergenic (+36/+26) | PP_5332/PP_5333 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (23/20); new base A (2/2); total (25/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.24e-01 |
ATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCACCACCCTCACCTTGTCTGCATCCAGCGCATAGGCCGCATCGGCCAGGTCATTGCTGACCTTCTCCACCTTCAGCTTGCCGCTGACCCACAG > NC_002947/6080852‑6081125 | aTGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCAAGCCCGCGAaga < 5:233158/149‑1 (MQ=255) tgCATCGTGACAGGGTATGTGTGGGTTGTCCTGGTGGAGTTGTAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCAAGCCCGCGAag < 4:342122/142‑1 (MQ=255) aatggagaCAGCTAATGTGTGGGATGACCTGGTGGAGTTGCAGCCTGGGGCGAGTCATTCGCGGGGCGTCCAGATCGTTTGTTAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCggg < 4:34081/144‑1 (MQ=255) agagAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTCGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCATGCTATTT‑TTTTACCGGCCTCTTAGCCGGATTGCCCGCGAAGAGGACGGGGCAATTATc > 8:39471/4‑148 (MQ=255) aGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATc > 6:291684/1‑148 (MQ=255) aGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGACTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATc > 4:298369/1‑148 (MQ=255) cGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCaaa < 5:291684/149‑1 (MQ=255) gAATGTGTGGGATGACCTGGTGGAGGTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCATGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAg < 7:226898/149‑1 (MQ=255) aTGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTCTTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAg < 1:270698/148‑1 (MQ=255) gtgGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAgg > 1:19956/1‑144 (MQ=255) gtgGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAgg < 2:19956/144‑1 (MQ=255) aCCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGTTTGTTAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTcca < 7:120156/149‑1 (MQ=255) ccTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTGTTccac > 6:202480/1‑149 (MQ=255) gggtaGTTGACGCCGGGGGCTATGCTTTCGGTGGGCTTCACGATCGTTTTTTAAAATATGTGCGCCCTGCTCTTT‑TTTTACCGCCCTCTGCGCGGGCTTGCCCGGTAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCaccacc < 8:295466/145‑1 (MQ=255) gTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAAtt > 3:81062/1‑118 (MQ=255) gTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAAtt < 4:81062/118‑1 (MQ=255) ttGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGc < 4:256897/130‑1 (MQ=255) gAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCACCACCCTCACCtt > 1:74082/1‑149 (MQ=255) gCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGGTTGCGGGGGATCAGGCCGGGGCTATTTTCAACGTAGGGCGTGTTCCCCCACCGGCACCTTGTc > 5:191813/1‑149 (MQ=255) gCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCACCACCCTCACCTTGTc > 8:4851/1‑149 (MQ=255) gcTGGGGCGTGGCATTCGCTGGGCGTCCTGATCGGTTGGTAAAATAGCTGAGCCCTGCTCTTT‑TTTTACCGCCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAgg < 3:155350/118‑1 (MQ=37) ccTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGACCGCGAAGAGGCCGGGGCAATTATCAAAgg > 4:155350/1‑119 (MQ=255) gCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGccc > 4:36892/1‑85 (MQ=255) gCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGccc < 3:36892/85‑1 (MQ=255) gCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGaa > 4:29024/1‑79 (MQ=255) gCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGaa < 3:29024/79‑1 (MQ=255) gTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAGGGTCTGCGTCTTCCACCACCCTCACCTTGTCTGCATCCAGCGCATAGGCCGCATCg > 5:126069/1‑149 (MQ=255) aGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCACCACCCTCACCTTGTCTGCATCCAGCGCATAGGCCGCATCGGCCa < 2:74082/149‑1 (MQ=255) aaTATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCACCACCCTCACCTTGTCTGCa < 8:226429/110‑1 (MQ=255) aaTATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCACCACCCTCACCTTGTCTGCa > 7:226429/1‑110 (MQ=255) gAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCACCACCCTCACCTTGTCTGCATCCAGCGCATAGGCCGCATCGGcc < 8:78901/127‑1 (MQ=255) gAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCACCACCCTCACCTTGTCTGCATCCAGCGCATAGGCCGCATCGGcc > 7:78901/1‑127 (MQ=255) gCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCACCACCCTCACCTTGTCTGCATCCAGCGCATAGGCCGCATCGGCCAGGTCAtt > 7:248/1‑133 (MQ=255) gCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCACCACCCTCACCTTGTCTGCATCCAGCGCATAGGCCGCATCGGCCAGGTCAtt < 8:248/133‑1 (MQ=255) ccTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCACCACCCTCACCTTGTCTGCATCCAGCGCATAGGCCGCATCGGCCAGGTCATTGCTGACCTTCTCCACCt > 4:193131/1‑148 (MQ=255) cTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCACCACCCTCACCTTGTCTGCATCCAGCGCATAGGCCGCATCGGCCAGGTCATTGCTGACCTTCTCCACCtt > 7:150887/1‑148 (MQ=255) cTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCACCACCCTCACCTTGTCTGCATCCAGCGCATAGGCCGCATCGGCCAGGTCATTGCTGACCTTCTCCACCTTc < 7:39471/149‑1 (MQ=255) ctctTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCACCACCCTCACCTTGTCTGCATCCAGCGCATAGGCCGCATCGGCCAGGTCATTGCTGACCTTCTCCACCTTCAGc < 7:4851/149‑1 (MQ=255) tctTT‑TTTTACCGGCCTCTTCGCCGCCTTGCCCGCCAAGAGGACGGGGCAATTAAAAAAGGTCTGCGTATTACAACACCCAAACATAAACTTCAAACACCGCATATTCCGCAACGCCCACATGAATGCAGACCATCTCCAcataaacc > 4:11731/1‑141 (MQ=255) ttttACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCACCACCCTCACCTTGTCTGCATCCAGCGCATAGGCCGCATCGGCCAGGTCATTGCTGACCTTCTCCACCTTCAGCTTGcc < 8:150887/148‑1 (MQ=255) cGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCACCACCCTCACCTTGTCTGCATCCAGCGCATAGGCCGCATCGGCCAGGTCATTGCTGACCTTCTCCACCTTCAGCTTGCCGCTGAcc > 7:308949/1‑149 (MQ=255) gCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCACCACCCTCACCTTGTCTGCATCCAGCGCATAGGCCGCATCGGCCAGGTCAtt < 3:10374/113‑1 (MQ=255) gCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCACCACCCTCACCTTGTCTGCATCCAGCGCATAGGCCGCATCGGCCAGGTCAtt > 4:10374/1‑113 (MQ=255) ctctTCGCGGGCAAGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCACCACCCTCACCTTGTCTGCATCCAGCGCATAGGCCGCATCGGCCAGGTCATTGCTGACCTTCTCCACCTTCAGCTTGCCGCTGACCcaca > 8:285676/1‑149 (MQ=255) tctTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCACCACCCTCACCTTGTCTGCATCCAGCGCATAGGCCGCATCGGCCAGGTCATTGCTGACCTTCTCCACCTTCAGCTTGCCGCTGACCCACAg > 6:319950/1‑149 (MQ=255) tctTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCACCACCCTCACCTTGTCTGCATCCAGCGCATAGGCCGCATCGGCCAGGTCATTGCTGACCTTCTCCACCTTCAGCTTGCCGCTGACCCACAg > 6:290463/1‑149 (MQ=255) tctTCGCGGGCAAGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCACCACCCTCACCTTGTCTGCATCCAGCGCATAGGCCGCATCGGCCAGGTCATTGCTGACCTTCTCCACCTTCAGCTTGCCGCTGACCCACAg > 2:60804/1‑149 (MQ=255) | ATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTT‑TTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGGGCAATTATCAAAGGTCTGCGTCTTCCACCACCCTCACCTTGTCTGCATCCAGCGCATAGGCCGCATCGGCCAGGTCATTGCTGACCTTCTCCACCTTCAGCTTGCCGCTGACCCACAG > NC_002947/6080852‑6081125 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |