Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 6,160,979 C→A 6.7% S151R (AGC→AGA PP_5740 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029476,160,9790CA 6.7% 191.1 / 3.4 60S151R (AGC→AGAPP_5740hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (27/29);  new base A (2/2);  total (29/31)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.90e-01

AGGCAAGCAATGGCTTCAGCTGGCATCTACCTCCACCCCAGGCGGTGAAGTTGATCCCAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATGGCGGCTTGGTTCCAATCAGAAAATTCGTCCCTGGGCGGTATCGCTCCCAAGGCCTTGCTGTTATCCGCCC  >  NC_002947/6160838‑6161124
                                                                                                                                             |                                                                                                                                                 
aGGCAAGCAATGGCTTCAGCTGGCATCTACCTCCACCCCAGGCGGTGAAGTTGATCCCAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGc                                                                                                                                             >  2:117816/1‑148 (MQ=255)
  gcaagcaaTGGCTTCAGCTGGCTTATACCTCCACCCCAGGCGGTGAAGTTGAACCCAATCGGTTAATGGCTGATGGACAGATGTTCTCGCTCCGACCTGGGAAGGGCGACTTTTTCCCCGTGTAGGCTTTGGACGGTAGAAACGGCTAt                                                                                                                                          >  7:53371/1‑149 (MQ=255)
  gcaagcaaTGGCTTCAGCTGGCATCTACCTCCACCCCAGGCGGTGAAGTTGATCCCAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGAAACGGCTAt                                                                                                                                          >  3:196580/1‑149 (MQ=255)
  gcaagcaaTGGCTTCAGCTGGCATCTACCTCCACCCCAGGCGGTGAAGTTGATCCCAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGAAACGGCTAt                                                                                                                                          <  4:196580/149‑1 (MQ=255)
  gcaaccaaTGGCTTCAGCTGGCATCTACCTCCACCCCCGGCGGTTAATTTGATCCCAATCGGTTACTGGCTGATGGTCATATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGAAACGGCTAt                                                                                                                                          <  8:53371/149‑1 (MQ=255)
   caagcaaTGGCTTCAGCTGGCATCTACCTCCACCCCAGGCGGTGAAGTTGATCCCAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATc                                                                                                                                         <  2:83364/149‑1 (MQ=255)
      gcaaTGGCTTCAGCTGGCATCTACCTCCACCCCAGGCGGTGAAGTTGATCCCAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGAc                                                                                                                                      >  4:203627/1‑149 (MQ=255)
           ggCTTCAGCTGGCATCTACCTCCACCCCAGGCGGTGAAGTTGATCCCAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTAt                                                                                                                                          <  4:75747/140‑1 (MQ=255)
           ggCTTCAGCTGGCATCTACCTCCACCCCAGGCGGTGAAGTTGATCCCAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTAt                                                                                                                                          >  3:75747/1‑140 (MQ=255)
             cTTCAGCTGGCATCTACCTCCACCCCAGGCGGTGAAGTTGATCCCAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATcag                                                                                                                               >  3:266943/1‑149 (MQ=255)
                      gCATCTACCTCCACCCCAGGCGGTGAAGTTGATCCCAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCtt                                                                                                                        <  7:128095/147‑1 (MQ=255)
                      gCATCTACCTCCACCCCAGGCGGTGAAGTTGATCCCAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGATTTGGACGGTAGCAACgg                                                                                                                                              >  2:315093/1‑125 (MQ=255)
                        aTCTACCTCCACCCCAGGCGGTGAAGTTGATCCCAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTcgc                                                                                                                     >  3:202927/1‑148 (MQ=255)
                             ccTCCACCCCAGGCGGTGAAGTTGATCCCAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGAc                                                                                                                  <  4:202927/146‑1 (MQ=255)
                               tCCACCCCAGGCGGTGAAGTTGATCCCAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGa                                                                                                                                   >  8:325958/1‑127 (MQ=255)
                               tCCACCCCAGGCGGTGAAGTTGATCCCAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGa                                                                                                                                   <  7:325958/127‑1 (MQ=255)
                               tCCACCCCAGGCGGTGAAGTTGATCCCAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACt                                                                                                             >  7:234237/1‑149 (MQ=255)
                                    cccAGGCGGTGAAGTTGATCCCAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCg                                                                                                        >  7:279409/1‑149 (MQ=255)
                                      cAGGCGGTGAAGTTGATCCCAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGtt                                                                                                      <  2:307789/149‑1 (MQ=255)
                                       aGGCGGTGAAGTTGATCCCAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTtc                                                                                                     <  1:117816/149‑1 (MQ=255)
                                         gCGGTGAAGTTGATCCCAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTtctc                                                                                                   <  5:151921/149‑1 (MQ=255)
                                         gCGGTGAAGTTGATCCCAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTtctc                                                                                                   >  6:95269/1‑149 (MQ=255)
                                                        ccAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGa                                                                                     <  7:323554/148‑1 (MQ=255)
                                                        ccAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGAc                                                                                    >  6:19430/1‑149 (MQ=255)
                                                                    tGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATg                                                                        >  2:247826/1‑149 (MQ=255)
                                                                     ggCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATgg                                                                       >  7:331741/1‑149 (MQ=255)
                                                                      gCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATg                                                                        <  7:302442/147‑1 (MQ=255)
                                                                        tGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATggcgg                                                                    >  2:196578/1‑149 (MQ=255)
                                                                          aTGGACAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGGATGCTTTGGACGGTCGCAACGGCTATCGACCGATCAGCAGGCTGCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGGGGTCTATGGCGGCt                                                                  <  5:285836/149‑1 (MQ=255)
                                                                              tCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGAc                                                                                              >  5:205018/1‑117 (MQ=255)
                                                                              tCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGAc                                                                                              <  6:205018/117‑1 (MQ=255)
                                                                                ataTCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATGGCGGCTTGGtt                                                             <  8:279409/146‑1 (MQ=255)
                                                                                aGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATg                                                                        <  5:123559/137‑1 (MQ=255)
                                                                                aGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATg                                                                        >  6:123559/1‑137 (MQ=255)
                                                                                aGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATGGCGGCTTGGtt                                                             <  5:95269/148‑1 (MQ=255)
                                                                                aGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATGGCGGCTTGGTTc                                                            <  8:234237/149‑1 (MQ=255)
                                                                                aGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATGGCGGCTTGGTTc                                                            <  1:196578/149‑1 (MQ=255)
                                                                                     ttctCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATGGCGGCTTGGTTCCAAt                                                        >  5:334201/1‑148 (MQ=255)
                                                                                           cTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATGGCGGCTTGGTTCCAATCAGaaaa                                                 <  5:19430/149‑1 (MQ=255)
                                                                                            tCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATgg                                                                       <  6:347322/126‑1 (MQ=255)
                                                                                            tCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATgg                                                                       >  5:347322/1‑126 (MQ=255)
                                                                                              cGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATGGCGGCTTGGTTCCAATCAGAAAATTc                                              <  8:331741/149‑1 (MQ=255)
                                                                                                      gAAGGTCGACTTTTTCCACGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATGGCGGCTTGGTTCCAATCAGAAAAt                                                <  6:256904/139‑1 (MQ=255)
                                                                                                                       ccGTGTATGCTTTGGAAGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGAATCGCATGGACGAGTGGTCTATGGAGGCTTGGTTCCAATCAGAAAATTCGTCACTGGGCGGTATCGCTCCCAAg                     >  6:170120/1‑149 (MQ=255)
                                                                                                                           gtATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATGGCGGCTTGGTTCCAATCAGAAAATTCGTCCCTGGGCGGTATCGCTCCCAAGGCCt                 >  7:245327/1‑149 (MQ=255)
                                                                                                                                cTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATGGCGGCTTGGTTCCAATCAGAAAATTCGTCCCTGGGCGGTATCGCTCCCAAGGCCTTGCTg            <  2:102151/149‑1 (MQ=255)
                                                                                                                                 tttGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATGGCGGCTTGGTTCCAATCAGAAAATTCGTCCCTGGGCGGTATCGCTCCCAAg                     >  8:57744/1‑139 (MQ=255)
                                                                                                                                 tttGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATGGCGGCTTGGTTCCAATCAGAAAATTCGTCCCTGGGCGGTATCGCTCCCAAg                     <  3:231622/139‑1 (MQ=255)
                                                                                                                                 tttGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATGGCGGCTTGGTTCCAATCAGAAAATTCGTCCCTGGGCGGTATCGCTCCCAAg                     <  7:57744/139‑1 (MQ=255)
                                                                                                                                 tttGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATGGCGGCTTGGTTCCAATCAGAAAATTCGTCCCTGGGCGGTATCGCTCCCAAg                     <  3:236207/139‑1 (MQ=255)
                                                                                                                                 tttGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATGGCGGCTTGGTTCCAATCAGAAAATTCGTCCCTGGGCGGTATCGCTCCCAAg                     >  4:231622/1‑139 (MQ=255)
                                                                                                                                 tttGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATGGCGGCTTGGTTCCAATCAGAAAATTCGTCCCTGGGCGGTATCGCTCCCAAg                     >  4:236207/1‑139 (MQ=255)
                                                                                                                                   tGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATGGCGGCTTGGtt                                                             <  5:174002/97‑1 (MQ=255)
                                                                                                                                   tGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATGGCGGCTTGGtt                                                             >  6:174002/1‑97 (MQ=255)
                                                                                                                                    ggACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATGGCGGCTTGGTTCCAATCAGAAAATTCGTCCCTGGGCGGTATCGCTCCCAAGGCCTTGCTGTTAt        >  1:297093/1‑149 (MQ=255)
                                                                                                                                        ggTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGt                                                                             >  3:257476/1‑76 (MQ=255)
                                                                                                                                        ggTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGt                                                                             >  3:252831/1‑76 (MQ=255)
                                                                                                                                        ggTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGt                                                                             <  4:252831/76‑1 (MQ=255)
                                                                                                                                        ggTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGt                                                                             <  4:257476/76‑1 (MQ=255)
                                                                                                                                          tAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATGGCGGCTTGGTTCCAATCAGAAAATTCGTCCCTGGGCGGTATCGCTCCCAAGGCCTTGCTGTTATCCGccc  <  2:297093/149‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                                 
AGGCAAGCAATGGCTTCAGCTGGCATCTACCTCCACCCCAGGCGGTGAAGTTGATCCCAATCGGTTACTGGCTGATGGTCAGATCTTCTCGCTCCGACCTGGGAAGGTCGACTTTTTCCCCGTGTATGCTTTGGACGGTAGCAACGGCTATCGACCGATCAGCAGGCTTCGCGACGTACTGTCCGTTCTCTCGACTCGCATGGACGAGTGGTCTATGGCGGCTTGGTTCCAATCAGAAAATTCGTCCCTGGGCGGTATCGCTCCCAAGGCCTTGCTGTTATCCGCCC  >  NC_002947/6160838‑6161124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: