Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 733,050 T→A 10.8% intergenic (+25/‑338) clpB → / → PP_t07 chaperone protein ClpB/tRNA‑Asn

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947733,0500TA10.8% 145.3 / 8.0 56intergenic (+25/‑338)clpB/PP_t07chaperone protein ClpB/tRNA‑Asn
Reads supporting (aligned to +/- strand):  ref base T (22/27);  new base A (3/3);  total (26/30)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.04e-01

GCTGAAGCGTGCGATCCAGCGCTGGATCGAGAACCCGCTGGCGCAGCTGATTCTGGCCGGCAAGTTCCTGCCCGGTACGGCGATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCTGAAATTTTTGAAATTTTTGCTTGCATCAAATTTAGAGTGCCCCTAATATACGCCGCGTTGTCA  >  NC_002947/732902‑733195
                                                                                                                                                    |                                                                                                                                                  
gCTGAAGCGTGCGATCCAGCGCTGGATCGAGAACCCGCTGGCGCAGCTGATTCTGGCCGGCAAGTTCCTGCCCGGTACGGCGATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGt                                                                                                                                                    >  5:12079/1‑149 (MQ=255)
gCTGAAGCGTGCGATCCAGCGCTGGATCGAGAACCCGCTGGCGCAGCTGATTCTGGCCGGCAAGTTCCTGCCCGGTACGGCGATCACCGCCAAGGGGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGt                                                                                                                                                    >  3:37901/1‑149 (MQ=255)
      gCGTGCGATCCAGCGCTGGATCGAGAACCCGCTGGCGCAGCTGATTCTGGCCGGCAAGTTCCTGCCCGGTACGGCGATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCgg                                                                                                                                              <  6:5464/149‑1 (MQ=255)
       cGTGCGATCCAGCGCTGGATCGAGAACCCGCTGGCGCAGCTGATTCTGGCCGGCAAGTTCCTGCCCGGTACGGCGATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCggg                                                                                                                                             <  6:12079/149‑1 (MQ=255)
          gCGATCCAGCGCTGGATCGAGAACCCGCTGGCGCAGCTGATTCTGGCCGGCAAGTTCCTGCCCGGTACGGCGATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCt                                                                                                                                          >  7:122595/1‑149 (MQ=255)
            gATCCAGCGCTGGATCGAGAACCCGCTGGCGCAGCTGATTCTGGCCGGCAAGTTCCTGCCCGGTACGGCGATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCAAACGCGGGGCtca                                                                                                                                        >  2:127218/1‑147 (MQ=255)
             aTCCAGCGCTGGATCGAGAACCCGCTGGCGCAGCTGATTCTGGCCGGCAAGTTCCTGCCCGGTACGGCGATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCAAACGCGGGGCtcat                                                                                                                                       <  1:127218/149‑4 (MQ=255)
                 aGCGCTGGATCGAGAACCCGCTGGCGCAGCTGATTCTGGCCGGCAAGTTCCTGCCCGGTACGGCGATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTg                                                                                                                                  <  7:143297/149‑1 (MQ=255)
                  gcgcTGGATCGAGAACCCGCTGGCGCAGCTGATTCTGGCCGGCAAGTTCCTGCCCGGTACGGCGATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGc                                                                                                                                 <  2:67470/149‑1 (MQ=255)
                          tCGAGAACCCGCTGGCGCAGCTGATTCTGGCCGGCAAGTTCCTGCCCGGTACGGCGATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGc                                                                                                                          >  5:254662/1‑148 (MQ=255)
                            gagaACCCGCTGGCGCAGCTGATTCTGGCCGGCAAGTTCCTGCCCGGTACGGCGATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATAAGCCCCGCAAACGCGGGGCtcat                                                                                                                                       <  7:45763/134‑4 (MQ=255)
                            gagaACCCGCTGGCGCAGCTGATTCTGGCCGGCAAGTTCCTGCCCGGTACGGCGATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATAAGCCCCGCAAACGCGGGGCtcat                                                                                                                                       >  8:45763/1‑131 (MQ=255)
                               aaCCCGCTGGCGCAGCTGATTCTGGCCGGCAAGTTCCTGCCCGGTACGGCGATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGc                                                                                                                    >  5:58205/1‑149 (MQ=255)
                                aCCCGCTGCGCAGCTGATTCTGGCCGGCAAGTTCCTGCCCGGTACGGCGATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCg                                                                                                                  >  2:87182/1‑149 (MQ=255)
                                        gcgcAGCTGATTCTGGCCGGCAAGTTCCTGCCCGGTACGGCGATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGc                                                                                                           >  3:344696/1‑149 (MQ=255)
                                           cAGCTGATTCTGGCCGGCAAGTTCCTGCCCGGTACGGCGATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCa                                                                                                        <  7:209420/149‑1 (MQ=255)
                                           cAGCTGATTCTGGCCGGCAAGTTCCTGCCCGGTACGGCGATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCa                                                                                                        <  6:254662/149‑1 (MQ=255)
                                                 aTTCTGGCCGGCAAGTTCCTGCCCGGTACGGCGATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTAtt                                                                                                  >  8:175267/1‑149 (MQ=255)
                                                             aaGTTCCTGCCCGGTACGGCGATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTgg                                                                                      <  1:150991/149‑1 (MQ=255)
                                                              aGTTCCTGCCCGGTACGGCGATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTCTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTgg                                                                                      <  1:87182/149‑1 (MQ=255)
                                                                  ccTGCCCGGTACGGCGATCACCGCCAAGGTGGAAGGCGACGAAATAGTAGTTTGCTGATTTTGTTGCACCATTAGCCCCGCGGTTTCGGGGCTTTTTTTGCCAGTTTCCAATTCCGGCACAGCCCAGCTATTTACGGCCGTTTGGCCaa                                                                                 >  1:243605/1‑149 (MQ=255)
                                                                        cGGTACGGCGATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCggg                                                                           <  4:344696/149‑1 (MQ=255)
                                                                             cGGCGATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTaa                                                                       <  8:151948/148‑1 (MQ=255)
                                                                                 gATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTAt                                                                                                   <  8:298422/116‑1 (MQ=255)
                                                                                 gATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTAt                                                                                                   >  7:298422/1‑116 (MQ=255)
                                                                                   tCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCAAACGCGGGGCtca                                                                                                                                        <  6:338780/78‑3 (MQ=38)
                                                                                   tCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCAAACGCGGGGCtca                                                                                                                                        >  5:338780/1‑76 (MQ=38)
                                                                                   tCACCGCCAAGGTGGAAGGCGACGAAATCGTCTATGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCAAGCTATTACGGGCCTTTGGGCCAACCCGGGGTAACCGCCt                                                                 >  1:232731/1‑148 (MQ=255)
                                                                                     aCCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCtga                                                               <  6:58205/148‑1 (MQ=255)
                                                                                      ccGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCtgaaa                                                             >  6:314415/1‑149 (MQ=255)
                                                                                       cGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGcc                                                                                                                   <  1:238405/94‑1 (MQ=255)
                                                                                       cGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGcc                                                                                                                   >  2:238405/1‑94 (MQ=255)
                                                                                       cGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGccc                                                                                                         <  5:79979/104‑1 (MQ=255)
                                                                                       cGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGccc                                                                                                         >  6:79979/1‑104 (MQ=255)
                                                                                       cGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCtgaaat                                                            >  5:33181/1‑149 (MQ=255)
                                                                                           aaGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCtgaaattttt                                                        <  5:314415/149‑1 (MQ=255)
                                                                                                       gacgaAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCTGAAATTTTTGAAATTTttgct                                            <  7:175267/149‑1 (MQ=255)
                                                                                                         cgaAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCTGAAATTTTTGAAATTTttgcttg                                          <  6:33181/149‑1 (MQ=255)
                                                                                                                   tttGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCTGAAATTTTTGAAATTTTTGCTTGCATCAAAtt                                 >  2:36039/1‑148 (MQ=255)
                                                                                                                     tGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCTGAAATTTTTGAAATTTTTGCTTGCATCAAAtt                                 >  2:229579/1‑146 (MQ=255)
                                                                                                                     tGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCTGAAATTTTTGAAATTTTTGCTTGCATCAAATTTa                               <  2:243605/148‑1 (MQ=255)
                                                                                                                          gATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCTGAAATTTTTGAAATTTttgcttgc                                         >  5:350081/1‑133 (MQ=255)
                                                                                                                          gATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCTGAAATTTTTGAAATTTttgcttgc                                         <  6:350081/133‑1 (MQ=255)
                                                                                                                                gtTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCTGAAATTTTTGAAATTTTTGCTTGAATCAAATTTAGAGTGCCCCTaa                   >  5:150913/1‑149 (MQ=255)
                                                                                                                                    cACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCTGAAATTTTTGAAATTTTTGCTTGCATCAAATTTAGAGTGCCCCTAAtata               <  1:229579/149‑1 (MQ=255)
                                                                                                                                     aCCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCTGAAATTTTTGAAATTTTTGCTTGCATCAAATTTAGAGt                           <  5:40601/136‑1 (MQ=255)
                                                                                                                                     aCCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCTGAAATTTTTGAAATTTTTGCTTGCATCAAATTTAGAGt                           >  6:40601/1‑136 (MQ=255)
                                                                                                                                     aCCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCTGAAATTTTTGAAATTTTTGCTTGCATCAAATTTAGAGTGCCCCTAATATAc              <  1:36039/149‑1 (MQ=255)
                                                                                                                                       cATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCTGAAATTTTTGAAATTTTTGCTTGCATCAAATTTAGAGTGCCCCTAATATAcgc            >  1:328815/1‑149 (MQ=255)
                                                                                                                                       cATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCTGAAATTTTTGAAATTTTTGCTTGCATCAAATTTAGAGTGCCCCTAATATAcgc            <  2:328815/149‑1 (MQ=255)
                                                                                                                                             ccccGCGTTTTCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCTGAAATTTTTGAAATTTTTGCTTGCATCAAATTTAGAGTGCCCCTAATATACGCCGCGtt      <  4:37901/149‑1 (MQ=255)
                                                                                                                                               ccGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCTGAAATTTTTGAAATTTTTGCTTGCATCAAATTTAGAGTGCCCCTAATATACGCCGCGTTGt    >  3:293882/1‑149 (MQ=255)
                                                                                                                                               ccGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCTGAAATTTTTGAAATTTTTGCTTGCATCAAATTTAGAGTGCCCCTAATATACGCCGCGTTGt    >  6:112541/1‑149 (MQ=255)
                                                                                                                                               ccGCGTTTGCGGGGCTTTTTTTGCCCGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCggaaattttt                                                        <  7:264097/97‑1 (MQ=255)
                                                                                                                                               ccGCGTTTGCGGGGCTTTTTTTGCCCGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCggaaattttt                                                        >  8:264097/1‑97 (MQ=255)
                                                                                                                                                cgcgTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCTGAAATTTTTGAAATTTTTGCTTGCATCAAATTTAGAGTGc                         <  6:114212/127‑1 (MQ=255)
                                                                                                                                                cgcgTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCTGAAATTTTTGAAATTTTTGCTTGCATCAAATTTAGAGTGc                         >  5:114212/1‑127 (MQ=255)
                                                                                                                                                 gcgTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCTGAAATTTTTGAAATTTTTGCTTGCATCAAATTTAGAGTGCCCCTAATATACGCCGCGTTGTCa  <  5:112541/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
GCTGAAGCGTGCGATCCAGCGCTGGATCGAGAACCCGCTGGCGCAGCTGATTCTGGCCGGCAAGTTCCTGCCCGGTACGGCGATCACCGCCAAGGTGGAAGGCGACGAAATCGTCTTTGGCTGATTGTGTTGCACCATGAGCCCCGCGTTTGCGGGGCTTTTTTTGCCTGTTGCCAATGCCGGCACAGCCCAGCTATTTCGGGCCTTTGGGCCAACCCGGGGTAACCGCCTGAAATTTTTGAAATTTTTGCTTGCATCAAATTTAGAGTGCCCCTAATATACGCCGCGTTGTCA  >  NC_002947/732902‑733195

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: