Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 753,375 | G→A | 7.5% | intergenic (‑614/‑369) | PP_0641 ← / → PP_5452 | hypothetical protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 753,375 | 0 | G | A | 7.5% | 147.9 / 3.1 | 53 | intergenic (‑614/‑369) | PP_0641/PP_5452 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (25/24); new base A (2/2); total (27/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.95e-01 |
CTTATCCATTATTAAAGGGGTGTACGGCACAAATTCGATTCCTGTCTCCGCACCAGTCAATTCAATGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGCGTCGCCCGCATCGCTTTAGATGTGGGAGTGTTTTCGTGCAGCCAGCAGCGCGCCAGGATCGGATTTATTAGGCT > NC_002947/753229‑753522 | cTTATCCATTATTAAAGGGGTGTACGGCACAAATTCGATTCCTGTCTCCGCACCAGTCAATTCAATGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCgg < 4:27095/148‑1 (MQ=255) ttATCCATTATTAAAGGGGTGTACGGCACAAATTCGATTCCTGTCTCCGCACCAGTCAATTCAATGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCggg > 4:338766/1‑148 (MQ=255) ttATCCATTATTAAAGGGGTGTACGGCACAAATTCGATTCCTGTCTCCGCACCAGTCAATTCAATGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCggg > 3:131103/1‑148 (MQ=255) aTCCATTATTAAAGGGGTGTACGGCACAAATTCGATTCCTGTCTCCGCACCAGTCAATTCAATGCCTCCAGCGCCTCCCGCTATCACCTCTCCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCggg < 1:270257/147‑1 (MQ=255) aTCCATTATTAAAGGGGTGTACGGCACAAATTCGATTCCTGTCTCCGCACCAGTCAATTCAATGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCggg < 4:131103/146‑1 (MQ=255) aTCCATTATTAAAGGGGTGTACGGCACAAATTCGATTCCTGTCTCCGCACCAGTCAATTCAATGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGa > 8:84397/1‑148 (MQ=255) aTCCATTATTAAAGGGGTGTACGGCACAAATTCGATTCCTGTCTCCGCACCAGTCAATTCAATGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGa < 7:84397/148‑1 (MQ=255) attattAAAGGGGTGTACGGCACAAATTCGATTCCTGTCTCCGCACCAGTCAATTCAATGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCa < 1:157233/149‑1 (MQ=255) attattAAAGGGGTGTACGGCACAAATTCGATTCCTGTCTCCGCACCAGTCAATTCAATGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCa > 1:99072/1‑149 (MQ=255) aaaGGGGTGTACGGCACAAATTCGATTCCTGTCTCCGCACCAGTCAATTCAATGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAgcg > 2:97692/1‑149 (MQ=255) gtgtACGGCACAAATTCGATTCCTGTCTCCGCACCAGTCAATTCAATGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGcc > 5:94044/1‑148 (MQ=255) aCGGCACAAATTCGATTCCTGTCTCCGCACCAGTCAATTCAATGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCATCGGCGCCGACCg > 5:309969/1‑149 (MQ=255) aaTTCGATTCCTGTCTCCGCACCAGTCAATTCAATGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAg < 8:103846/149‑1 (MQ=255) aTTCGATTCCTGTCTCCGCACCAGTCAATTCAATGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAg > 6:146527/1‑148 (MQ=255) aTTCGATTCCTGTCTCCGCACCAGTCAATTCAATGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGt < 1:7437/149‑1 (MQ=255) tCGATTCCTGTCTCCGCACCAGTCAATTCAATGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTa < 2:99072/148‑1 (MQ=255) ttCCTGTCTCCGCACCAGTCAATTCAATGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTaaacc > 7:156865/1‑148 (MQ=255) cGCACCAGTCAATTCAATGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCAc < 6:309969/149‑1 (MQ=255) aattcaatGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTtggtgg > 5:5421/1‑149 (MQ=255) attcaatGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTtggtgg > 3:52335/1‑148 (MQ=255) aatGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTAttt < 6:94044/149‑1 (MQ=255) atGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCAGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAAACCAAACCCCCACCTTTTGGTGGTATTTa > 4:290134/1‑149 (MQ=255) aagCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCAGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAAACCAAACCCCCACCTTTTGGTGGTATTTa > 4:295049/3‑149 (MQ=255) tGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTAt > 1:327104/1‑149 (MQ=255) cTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCACACCCCCACCTGTTGGGGGTCTTTAtctc > 4:263313/1‑149 (MQ=255) cAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTa < 1:176220/138‑1 (MQ=255) cAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTa > 2:176220/1‑138 (MQ=255) cAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATctct < 8:101601/147‑1 (MQ=255) cAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGc < 2:327104/149‑1 (MQ=255) cAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGc < 6:5421/149‑1 (MQ=255) cAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCAGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATctct < 3:290134/147‑1 (MQ=255) cAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCAGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATctct < 3:295049/147‑1 (MQ=255) ccTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGCGTCGc < 8:156865/149‑1 (MQ=255) tCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGc > 1:234094/1‑142 (MQ=255) tCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGc < 2:234094/142‑1 (MQ=255) aCCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGTCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGCGTCGCCCGCATCGCttt < 4:52335/149‑1 (MQ=255) ccTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGCGTc > 8:246842/1‑134 (MQ=255) ccTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGCGTc < 7:246842/134‑1 (MQ=255) cTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGTGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGCGTCGCCCGCATCGCtt > 2:50160/1‑146 (MQ=255) cTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGCGTCGCCCGCATCGCtt > 4:305451/1‑146 (MQ=255) tC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTaaacccaaaccc > 4:79415/1‑102 (MQ=255) tC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTaaacccaaaccc < 3:79415/102‑1 (MQ=255) tC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCtttt < 2:189878/111‑1 (MQ=255) tC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCtttt > 1:189878/1‑111 (MQ=255) gCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGCGTCGCCCGCATCGCTTTAGAtgtg < 5:31143/149‑1 (MQ=255) cAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGTGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGCGTCGCCCGCATCGCTTTAGATGTGGGa < 1:50160/149‑1 (MQ=255) cagcagCGTGACAGCAAACTGCCCAAATATCCGCGTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGCGTCGCCCGCATCGCTTTAGATGTGGGAGTGTTTTc < 3:263313/149‑1 (MQ=255) agcagcGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGCGTCGCCCGCATCGCTTTAGATGTGGGAGTGTTTTCg > 5:341995/1‑149 (MQ=255) cagcGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGCGTCGCCCGCATCGCTTTAGATGTGGGAGTGTTTTCGTg < 3:305451/149‑1 (MQ=255) aGCAAACTGCCAAAATATCCGCTTTTCCGGGGATTTAACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGCGTCGCCCGCATCGCTTTAGTTGTGGGAGTGTTTTCGTGCAGccacca > 8:292406/1‑149 (MQ=255) cAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGCGTCGCCCGCATCGCtt < 6:128596/116‑1 (MQ=255) cAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGCGTCGCCCGCATCGCtt > 5:128596/1‑116 (MQ=255) cAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGCGTCGCCCGCATCGCTTTAGa > 2:3758/1‑120 (MQ=255) ccAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGCGTCGCCCGCATCGCTTTAGATGTGGGAGTGTTTTCGTGCAGCCAGCAGCGCGCCAg > 1:10032/1‑148 (MQ=255) cGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGCGTCGCCCGCATCGCTTTAGATGTGGGAGTGTTTTCGTGCAGCCAGCAGCGCGCCAGGATCGGAtt > 6:359287/1‑148 (MQ=255) ttCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGCGTCGCCCGCATCGCTTTAGATGTGGGAGTGTTTTCGTGCAGCCAGCAGCGCGCCAGGATCGGATttatta < 6:341995/148‑1 (MQ=255) ttCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGCGTCGCCCGCATCGCTTTAGATGTGGGAGTGTTTTCGTGCAGCCAGCAGCGCGCCAGGATCGGATttatt < 5:359287/147‑1 (MQ=255) cGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGCGTCGCCCGCATCGCTTTAGATGTGGGAGTGTTTTCGTGCAGCCAGCAGCGCGCCAGGATCGGATTTATTAGGCt > 1:64417/1‑149 (MQ=255) | CTTATCCATTATTAAAGGGGTGTACGGCACAAATTCGATTCCTGTCTCCGCACCAGTCAATTCAATGCCTCCAGCGCCTCCCGCTATCACCTC‑CCGCCCAGCGTGCCAGCAGCGTGACAGCAAACTGCCCAAATATCCGCTTTTCCGGGGATTTCACCAGCGGCGCCGACCGGGTGGCAGTAAACCCAAACCCCCACCTTTTGGTGGTATTTATCTCTGCGTCGCCCGCATCGCTTTAGATGTGGGAGTGTTTTCGTGCAGCCAGCAGCGCGCCAGGATCGGATTTATTAGGCT > NC_002947/753229‑753522 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |