Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 813,203 | C→A | 8.8% | intergenic (+110/+21) | PP_0699 → / ← PP_t70 | LysE family transporter/tRNA‑Met |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 813,203 | 0 | C | A | 8.8% | 174.1 / 7.2 | 57 | intergenic (+110/+21) | PP_0699/PP_t70 | LysE family transporter/tRNA‑Met |
Reads supporting (aligned to +/- strand): ref base C (24/28); new base A (2/3); total (26/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.35e-01 |
GCTTGGCCTGGCTGTGGCGGTGACCGGAATACGTTGAGGCGACGATAGCAGCGCCGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATT > NC_002947/813057‑813347 | gCTTGGCCTGGCTGTGGCGGTGACCGGAATACGTTGAGGCGACGATAGCAGCGCCGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCgg > 6:78723/1‑149 (MQ=255) ttGGCCTGGCTGTGGCGGTGACCGGAATACGTTGAGGCGACGATAGCAGCGCCGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGt > 4:133836/1‑148 (MQ=255) gCCTGGCTGTGGCGGTGACCGGAATACGTTGAGGCGACGATAGCAGCGCCGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAg < 1:219652/148‑1 (MQ=255) cTGGCTGTGGCGGTGACCGGAATACGTTGAGGCGACGATAGCAGCGCCGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTaa < 4:24706/145‑1 (MQ=255) cTGGCTGTGGCGGTGACCGGAATACGTTGAGGCGACGATAGCAGCGCCGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTaa > 3:24706/1‑145 (MQ=255) gCTGTGGCGGTGACCGGAATACGTTGAGGCGACGATAGCAGCGCCGAAACCTGTGATTCAGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCttt < 3:329936/149‑1 (MQ=255) gCGGTGACCGGAATACGTTGAGGCGACGATAGCAGCGCCGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCtt < 1:178371/148‑1 (MQ=255) gCGGTGACCGGAATACGTTGAGGCGACGATAGCAGCGCCGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCtt > 2:178371/1‑148 (MQ=255) cGGTGACCGGAATACGTTGAGGCGACGATAGCAGCGCCGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCGCAAGGTAAGCCCTTTTTCtttg < 7:311056/149‑3 (MQ=39) cGGTGACCGGAAGACGTTGAGGCGCCGCTAGCAGCGCCGAAACCTGTGATTCGGCGCCCGGCTGCGGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTATGCCCTTTGTCTTGt < 4:199038/149‑1 (MQ=255) aCCGGAATACGTTGAGGCGACGATAGCAGCGCCGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAACAAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTtg < 1:238493/148‑1 (MQ=255) ccGGAATACGTTGAGGCGACGATAGCAGCGCCGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTtggtg < 5:78723/149‑1 (MQ=255) cGGAATACGTTGAGGCGACGATAGCAGCGCCGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTtggtgg > 5:11165/1‑149 (MQ=255) gTTGAGGCGACGATAGCAGCGCCGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGccc < 1:39218/124‑1 (MQ=255) gTTGAGGCGACGATAGCAGCGCCGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGccc > 2:39218/1‑124 (MQ=255) gCGACGATAGCAGCGCCGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTATGTCTTGTTTGGTGGCTACACAGGGACtt > 7:171440/1‑149 (MQ=255) gacgaTAGCAGCGCCGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCATGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAg < 8:73345/141‑1 (MQ=255) gacgaTAGCAGCGCCGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAg > 7:73345/1‑141 (MQ=255) cgaTAGCAGCGCCGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTATGTCTTGTTTGGTGGCTACACAGGGACTTGAAc < 8:171440/149‑1 (MQ=255) gcgcCGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGAcc < 6:11165/149‑1 (MQ=255) ccGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGaa < 1:260371/137‑1 (MQ=255) ccGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGaa > 2:260371/1‑137 (MQ=255) cGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGACA‑AAGGGCTTACCGCAAGGTAAGCCCt > 3:174990/1‑103 (MQ=38) cGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGACA‑AAGGGCTTACCGCAAGGTAAGCCCt < 4:174990/103‑1 (MQ=38) cGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGtt < 1:276347/113‑1 (MQ=255) cGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAg > 8:192825/1‑149 (MQ=255) cGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGAATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGtt > 2:276347/1‑113 (MQ=255) tgtgATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAggg < 4:189292/122‑1 (MQ=255) tgtgATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAggg > 3:189292/1‑122 (MQ=255) tgtgATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTAt > 8:116134/1‑148 (MQ=255) ttCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTtgg < 7:214013/104‑1 (MQ=255) ttCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTtgg > 8:214013/1‑104 (MQ=255) tCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAatgc > 6:284530/1‑148 (MQ=255) cgcCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAatgctatgc < 6:197486/149‑1 (MQ=255) gcCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGCACCCCGGACCCCAGCATTATGAatgctatgct > 7:41506/1‑149 (MQ=255) ccGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAATGCTATGctc > 4:216807/1‑148 (MQ=255) cGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTg < 3:216807/148‑1 (MQ=255) gggATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTggg < 3:133836/149‑3 (MQ=255) ggATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGc < 7:192825/149‑1 (MQ=255) tggttggCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTAt < 7:116134/148‑1 (MQ=255) gttggCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTAt > 4:85012/1‑117 (MQ=255) gttggCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTAt < 3:85012/117‑1 (MQ=255) tCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGgcgcgc < 8:41506/149‑1 (MQ=255) aGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAATGCTATGctc < 6:194195/115‑1 (MQ=255) aGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAATGCTATGctc > 5:194195/1‑115 (MQ=255) aGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTATTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCat < 5:284530/149‑1 (MQ=255) gCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCat > 3:28810/1‑148 (MQ=255) gCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGCCCCCAGCATTATGAATGCTATGCTATAACCAACTGAGCTATGTGGCCGATGGCGCGCATTATTGTCTTGaa > 4:182057/1‑149 (MQ=255) gCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCa > 6:42850/1‑86 (MQ=255) gCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCa < 5:42850/86‑1 (MQ=255) gCAAAGAAA‑AAGGGCTTTCCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGcc < 3:182057/149‑1 (MQ=255) gaca‑aaGGGCTTACCGCAAGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAatgctat > 6:139019/4‑90 (MQ=37) gaca‑aaGGGCTTACCGCAAGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAatgctat < 5:139019/87‑1 (MQ=37) gggCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCaa < 5:349616/149‑1 (MQ=255) cTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCatt < 1:342274/115‑1 (MQ=255) cTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCatt > 2:342274/1‑115 (MQ=255) cTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCAtt > 5:282020/1‑149 (MQ=255) | GCTTGGCCTGGCTGTGGCGGTGACCGGAATACGTTGAGGCGACGATAGCAGCGCCGAAACCTGTGATTCGGCGCCCGGCTGCTGCGGGATTGGTTGGCGCGGGCATCAGCAACTTTTTCGCAGGCAAAGAAA‑AAGGGCTTACCTTGCGGTAAGCCCTTTGTCTTGTTTGGTGGCTACACAGGGACTTGAACCCCGGACCCCAGCATTATGAATGCTATGCTCTAACCAACTGAGCTATGTAGCCGATGGCGCGCATTATTCTCTTGAACGCCCCCTCTGTCAACACTCATT > NC_002947/813057‑813347 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |